Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 648 a.a., MacB family efflux pump subunit from Dickeya dianthicola ME23

 Score =  135 bits (339), Expect = 4e-36
 Identities = 103/410 (25%), Positives = 198/410 (48%), Gaps = 29/410 (7%)

Query: 2   RITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVI 61
           R+ +    A R ++ ++ ++FLT++G++IGI ++VS+++LG G Q  +   I  +G + +
Sbjct: 254 RLQNAFRMALRAMSAQRIRTFLTMLGIIIGIASVVSVVALGKGSQQQMLEHINAMGTSTL 313

Query: 62  SVLPSQNFGG--PAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
            +   ++FG    A  +    ND+  +     +  V      S  L Y +++   +V  +
Sbjct: 314 EIFSGKDFGDMHSAAIQTLRVNDLRPLEQQPYIHSVTPTVSTSATLRYANKAVSVSVSGV 373

Query: 120 EPSKFT---HVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREIDIGDKITINDK 176
               FT   +V S+  G+ P     +             L  N    E  +G  I +   
Sbjct: 374 GEQFFTVRGYVLSEGNGFSPLSVERLTQEAVIDQNTRNKLFPNG---ENPLGQVIFLGQL 430

Query: 177 KYKVIGIL--EETGNPRTEN-------SVILSKDVGEELFEINNEYNMMIVSVRSGEDVN 227
             ++IG+   +++G    EN       + ++ + VG+           + V V+   D++
Sbjct: 431 PCRIIGVATRKQSGFGSDENLNVWVPYTTVMRRMVGQSYLR------SITVRVKDNIDLS 484

Query: 228 LVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNT 287
           +  + I   L    G+++F V+  + + ++I      +T+ +  +A ISL+VG +G+ N 
Sbjct: 485 VAQQGITQILTRQHGNKDFFVMNTDSIRQTIRQTTATMTLLVSAIALISLIVGGIGVMNI 544

Query: 288 MHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAA 347
           M +S+ ER ++IG+  A+GA    I+  F++EA  + L GGI+G +L  L+A AI   + 
Sbjct: 545 MLVSVTERTREIGVRMAVGARTGDIMQQFLIEAVLVCLCGGILGVILS-LLAGAI--ASR 601

Query: 348 ISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           ISG   +    S  ++      S ++G++ G+FPAR  A+L P+  L  E
Sbjct: 602 ISGVTFV---YSAPVMALAFFCSSLIGVIFGFFPARRAARLQPIHALERE 648