Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 648 a.a., MacB family efflux pump subunit from Dickeya dadantii 3937

 Score =  140 bits (353), Expect = 1e-37
 Identities = 99/410 (24%), Positives = 195/410 (47%), Gaps = 29/410 (7%)

Query: 2   RITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVI 61
           R+ +    A R +  ++ ++FLT++G++IGI ++VS+++LG G Q  +   I  +G + +
Sbjct: 254 RLQNAFRMALRAMNAQRMRTFLTMLGIIIGIASVVSVVALGKGSQQQVLEHINAMGTSTL 313

Query: 62  SVLPSQNFGG--PAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
            + P ++FG    A  +    ND+  +     +  V      S  L Y  ++   +V  +
Sbjct: 314 EIFPGKDFGDMRSAAIQTLRVNDLRPLEQQPYIHSVTPTVSTSVTLRYASKAVSVSVSGV 373

Query: 120 EPSKFT---HVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREIDIGDKITINDK 176
               FT   +V S+  G+ P     +             L  N    E  +G  I +   
Sbjct: 374 GEQFFTVRGYVLSQGNGFSPLSVERLTQEAVIDQNTRNKLFPNG---ENPLGQVIFLGTL 430

Query: 177 KYKVIGIL--EETGNPRTEN-------SVILSKDVGEELFEINNEYNMMIVSVRSGEDVN 227
             ++IG+   +++G    EN       + ++ + VG+           + V V+   D++
Sbjct: 431 PCRIIGVTTRKQSGFGSDENLNIWVPYTTVMRRMVGQSYLR------SITVRVKDNIDLS 484

Query: 228 LVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNT 287
           +  + I   L    G+++F V+  + + ++I      +T+ +  +A ISL+VG +G+ N 
Sbjct: 485 VAQQGITQILTRQHGNKDFFVMNTDSIRQTIRQTTATMTLLVSAIALISLIVGGIGVMNI 544

Query: 288 MHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAA 347
           M +S+ ER ++IG+  A+GA    I+  F++EA  + L GG++G ML +L       +++
Sbjct: 545 MLVSVTERTREIGVRMAVGARTGDIMQQFLIEAVLVCLCGGVLGVMLSLLAGAIASRVSS 604

Query: 348 ISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           ++         S   +V   + S ++G++ G+FPAR  A+L P+  L  E
Sbjct: 605 VA------FLYSPTSMVAAFLCSSLIGVIFGFFPARRAAQLQPIHALERE 648