Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 415 a.a., ABC-type antimicrobial peptide transport system, permease component from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  124 bits (310), Expect = 7e-33
 Identities = 109/414 (26%), Positives = 200/414 (48%), Gaps = 40/414 (9%)

Query: 9   FAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLPSQN 68
           FA + +    T++ L+++GV IGI AI+++ +L   ++  I S  + +G NV+ V     
Sbjct: 13  FALQALRSNLTRTVLSLLGVTIGIFAIIAVFTLVDSLEKNIKSSFSFLGTNVLRVDRFPF 72

Query: 69  FGGPAV----------SKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLV 118
             GP              N+++  V     ++  E +  +   S  L+    S  G  L 
Sbjct: 73  SSGPGEYPWWRYFRRPPANYSEF-VFLKERLKNAEAITISASASATLKRGSSSFEGANL- 130

Query: 119 IEPSKFTHVYSKTWGYEPYKGRWIEDSD----KYSCMIGYALATNSFDREIDIGDKITIN 174
            E   F H   + +      GR+  + +    +   ++G  +A   F     IG ++ I 
Sbjct: 131 -EGVVFDH--KEVYDVPVVDGRFFTELEITAARNVTVLGAKIANALFPEGDAIGKEMKIK 187

Query: 175 DKKYKVIGILEETGN-----PRTENSVILSKDVGEELFEINN---EYNMMIVSVRSGEDV 226
            +K+ VIG+LEE G      P  +++ ++      +++ +     E  +    + S   +
Sbjct: 188 GQKFMVIGLLEEEGEGLFDLPSKDDACLIPFGSFGKMYYLGRWGIEPTIAAKGMDSDRGL 247

Query: 227 NLVSEEIKDELEDSRG-----DENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGA 281
             +  E+   L   RG     +++F++  +E +  +I +IF+V++I    + G S+LVG 
Sbjct: 248 IALENEMTGLLRGKRGLKPTEEDDFALNKSEFIQNAIGAIFDVISIAGAVIGGFSILVGG 307

Query: 282 VGISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKA 341
            GI+N M +S+ ER   IGI K+LGA+N  IL  F+ E+ FL LFGG+     G+++  A
Sbjct: 308 FGIANIMFVSVRERTNIIGIQKSLGAKNYFILLQFLFESTFLSLFGGLT----GLVLVFA 363

Query: 342 IEYIAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
           I +I      G +  ++S + +   +  S V+G+LSG  PA   A+++PV+ +R
Sbjct: 364 ITFIP----LGSLEIFMSAKNMALGIGLSMVIGMLSGVVPAGIAARMDPVEAIR 413