Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 648 a.a., ABC transporter nucleotide binding/ATPase from Agrobacterium fabrum C58

 Score =  137 bits (345), Expect = 9e-37
 Identities = 110/405 (27%), Positives = 194/405 (47%), Gaps = 24/405 (5%)

Query: 2   RITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVI 61
           R+T+ +  AG  I   K +S LT++G++IGI ++ ++ +LG G Q  I S I+++G N I
Sbjct: 253 RMTEALRMAGAAIWAHKMRSLLTMLGIIIGIASVAAISALGAGSQQQILSSISSLGTNTI 312

Query: 62  SVLPSQNFGGPAVSK--NFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
            V   + FG     K       D  A+ N   V+ V      S  ++    +   +V  +
Sbjct: 313 EVRAGKGFGDLEAGKIRTLVPADAEALVNQPYVDSVTPTVTTSVTVKRAAVAVNASVTGV 372

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSD----KYSCMIGYALATNSF-DREIDIGDKITIN 174
               F     +  G E   G+  +  D      + +I  + A + F DR   +G  I + 
Sbjct: 373 GADFF-----RVRGLELAHGQLFDAQDVIAYSQNVVIDASAARDLFPDRVNPVGQVILLG 427

Query: 175 DKKYKVIGIL--EETGNPRTENSVILSKD---VGEELFEINNEYNMMIVSVRSGEDVNLV 229
               +V+G+   E +  P  +   + +     +G  L   N   + + V +R   D   V
Sbjct: 428 TMPARVVGVTKRENSFGPAVDTLTVYAPYTTVMGRMLGRPN--VDGITVRIRDDVDPGNV 485

Query: 230 SEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMH 289
              +   +E   G ++F +  +  + E+I +  + LT+ +  VA ISL+VG +G+ N M 
Sbjct: 486 EAAVTRLIERRHGAKDFFLTNSATIRETIETTTQTLTLLISSVAVISLIVGGIGVMNIML 545

Query: 290 MSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAIS 349
           +S+ ER K+IG+  A+GA  + ILS F++EA  + L GG++G ML + I+     ++   
Sbjct: 546 VSVTERTKEIGVRVAVGARRSDILSQFLIEAVMVCLVGGLMGIMLALGISALFNLLSPD- 604

Query: 350 GYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTL 394
                +   S   I+     S ++GI+ G+ PAR+ AKL+P++ L
Sbjct: 605 ----FKMIFSPGSIIVAFACSTLIGIVFGFLPARNAAKLDPIEAL 645