Pairwise Alignments

Query, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

Subject, 217 a.a., choline ABC transporter permease from Pseudomonas simiae WCS417

 Score =  101 bits (252), Expect = 1e-26
 Identities = 57/178 (32%), Positives = 102/178 (57%), Gaps = 5/178 (2%)

Query: 94  LSLIITSTLIALLLGIPLGIVKARSKLVSTLLDPMLDVMQTLPSLAY---LIPAVLFFG- 149
           ++L+  + ++A+L+G+PLGI+  R   ++  L     V+ T+PS+A    L+P    FG 
Sbjct: 23  ITLVGIAVILAILIGVPLGILMTRFPTLAGPLQASATVLLTVPSIALFGLLLPFYSKFGQ 82

Query: 150 -IGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEVGRAFGGTSWQILTKIELPTAVPS 208
            +G +P + A  ++++ P ++ T L +  V   + E  R  G T  Q L  +ELP AVP 
Sbjct: 83  GLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPV 142

Query: 209 IMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQRYSLAPALEAGIAVTFLAVIFD 266
           I+ GV  A++++  ++ IA  IG+GGLG +I++ I R  ++  +   + V+ LA+  D
Sbjct: 143 ILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRSDMSMLIVGAVLVSLLAIFAD 200