Pairwise Alignments

Query, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

Subject, 343 a.a., ABC transporter, membrane spanning protein (proline/glycine betaine) from Agrobacterium fabrum C58

 Score =  215 bits (548), Expect = 9e-61
 Identities = 105/265 (39%), Positives = 171/265 (64%), Gaps = 1/265 (0%)

Query: 7   LGIGKFLVNLIDFLIDNYSGFFDLISYVIQSGVDFFHFLLFSINPYLMILLI-AVIVWKT 65
           L IG++    ID+L  N + FFD +S++ QS ++   ++L + +P +++ ++ A+  W  
Sbjct: 71  LPIGRYAKEAIDWLTGNLAFFFDWLSFIFQSVINALLYVLQAPHPLIIVAIVTALSAWTR 130

Query: 66  VNLKSMLYSVFFLVIIVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVSTLL 125
            +    +++   L++I+ +G W  +  TL+L+I ++ + +++GIPLGI+ AR K +   +
Sbjct: 131 RSAGMPIFTALGLLLIINLGYWKATTETLALVIAASAVCMIIGIPLGILAARRKWIYAGM 190

Query: 126 DPMLDVMQTLPSLAYLIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEV 185
            P LD+MQT+P+  YLIPA++ FG+G VPG+IATVIFA+P  ++LT LGI      L+E 
Sbjct: 191 RPALDLMQTIPTFVYLIPALVLFGLGMVPGLIATVIFAIPAPVRLTRLGIVSTPPALVEA 250

Query: 186 GRAFGGTSWQILTKIELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQR 245
             AFG T  Q+L K+ELP A P IM G+ Q IMLS SMVVI+  +G+ GLG  ++  +  
Sbjct: 251 AVAFGATPSQVLRKVELPFAAPQIMAGLTQTIMLSLSMVVISALVGANGLGVPVVRALNT 310

Query: 246 YSLAPALEAGIAVTFLAVIFDRITR 270
            ++A   EAG+ +  LA++ DR+ R
Sbjct: 311 VNIAMGFEAGLCIVILAIVLDRLFR 335