Pairwise Alignments

Query, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

Subject, 302 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  197 bits (501), Expect = 2e-55
 Identities = 102/253 (40%), Positives = 165/253 (65%), Gaps = 3/253 (1%)

Query: 20  LIDNYSGFFDLISYVIQSGVDFFHFLLFSINPYL--MILLIAVIVWKTVNLKSMLYSVFF 77
           ++ NY    D+I + +Q  ++     LF   P++  M++++A++     + K    +   
Sbjct: 36  IVRNYGDAIDVIVHPLQLFLNASE-RLFIETPWIITMLVILAIVHLAGRSFKITGGTAIS 94

Query: 78  LVIIVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVSTLLDPMLDVMQTLPS 137
           L +I  +GLW  +M TLS++  +TLIA+++G+PLGI+  RS+ +  L++P+LDVMQTLPS
Sbjct: 95  LFMIGAVGLWRDAMTTLSIVTIATLIAIVIGLPLGILMGRSERLQRLINPVLDVMQTLPS 154

Query: 138 LAYLIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEVGRAFGGTSWQIL 197
             YLIP V+ FGIG+VPG+IA VI+A+PP I+LT+LGI  V  E++E   AFG ++ Q L
Sbjct: 155 FVYLIPVVVIFGIGKVPGLIAVVIYAIPPVIRLTSLGIRLVDREVLEAADAFGSSNGQKL 214

Query: 198 TKIELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQRYSLAPALEAGIA 257
             ++LP A+P+IM G+NQ IM++ +MVV+A  +G GGLG+ ++  I           G A
Sbjct: 215 FNVQLPLALPTIMTGINQTIMMALAMVVVASMVGVGGLGKNVLQAINNQFFTVGFLNGFA 274

Query: 258 VTFLAVIFDRITR 270
           +  +A++FDR ++
Sbjct: 275 LVAIAIMFDRASQ 287