Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 338 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 51/293 (17%)

Query: 43  WPGVTVKSNVVKVILEEQGYNVELNQLDAGITYAKLADGDLDVSLAGWLPTTHEEYWTQY 102
           W   ++ + V++VI+E+ GY++  + L       + A    D+ + G         W + 
Sbjct: 38  WESGSLITEVLRVIVEK-GYDLPTDTLPGTTITLETALAKNDIQVIGEEWAGRSPVWVKA 96

Query: 103 GNQLEMVHVNVGKTALGLA----VPTYTYEAG-----------IQSITDLNGNEELFDGK 147
             + E   V +G T  G      VP Y  +             ++S+ DL   +++F   
Sbjct: 97  --EAEGKVVGLGDTVKGATEGWWVPEYVVKGDPAKGIKPLAPELKSVKDLARYKDVFKDP 154

Query: 148 IIGIEPGAGIMSN-----TEKAIDSYSLSGYEL-------QSSSTPAMMAELARAINEDE 195
                PG G   N     T + ++   L  Y L       +S S  A+ AE+A +I   +
Sbjct: 155 E---SPGKGRFLNSPIGWTSEVVNKQKLKAYGLDDSYVNFRSGSGAALDAEIASSIRRGK 211

Query: 196 NIVVTVWEPHSVFFKFDIKMLDDPE------KVYGDGD------------KVYTIARTDF 237
            ++   W P  +  ++ +  L++P       K   D D            K+     T F
Sbjct: 212 PVLFYYWSPTPLMGRYKLIQLEEPPFDAEAWKTLTDADNPNPKPTRSLASKLSIGVSTPF 271

Query: 238 KDDYPEVYEFFQKFEVDPSVQSEWIYKYSDEGMDPEEVAEEWVANNPELVENW 290
           + ++P++ +FF+K E      ++ +   S+    P EVA+ ++  +P++ + W
Sbjct: 272 QKEHPQIAQFFEKVEFPIEPLNKALATMSENHTAPREVAQMFLKEHPQVWKAW 324