Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 338 a.a., putative Amino acid transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 64/323 (19%), Positives = 120/323 (37%), Gaps = 47/323 (14%)

Query: 11  LLGLAVMFSGCVQSPQSTDDTEKGTIKFGLPPWPGVTVKSNVVKVILEEQGYNVELNQLD 70
           LL   ++  G   +  +    +   I FG   W    + + ++++I+E +GY    + L 
Sbjct: 7   LLAGLLLTVGLASTDSAASAEQPAPIHFGAIGWESGALTTEILRLIVE-RGYGYRTDTLP 65

Query: 71  AGITYAK--LADGDLDVSLAGWLPTTHEEYWTQYGNQLEMVHVNVGKTALGLAVPTYTYE 128
                 +  LA  DL V    W   +      +   Q+  +   V     G  VP Y  E
Sbjct: 66  GSTVSMEVALARNDLQVIAEEWAGRSPAWVKAEQAGQVFALGDTVKNAEEGWWVPAYVIE 125

Query: 129 AG-----------IQSITDLNGNEELFDGKIIGIEPGAGIMSN-----TEKAIDSYSLSG 172
                        + S+ DL    ++F        PG G   N     T + ++S  L  
Sbjct: 126 GDAARNLKPVAPELHSVEDLKRYPQVFSDPE---SPGKGRFLNSPSGWTSETVNSQKLKA 182

Query: 173 YEL-------QSSSTPAMMAELARAINEDENIVVTVWEPHSVFFKFDIKMLD-------- 217
           Y L       +S S  AM AE+  AI   + ++   W P  +  ++ +  L+        
Sbjct: 183 YGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFDAQA 242

Query: 218 -----DPEKVYGDGD-----KVYTIARTDFKDDYPEVYEFFQKFEVDPSVQSEWIYKYSD 267
                DP      G      K+       F+++YP++   F++ ++     ++ +   S+
Sbjct: 243 WATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVDLPIDRLNKALAVMSE 302

Query: 268 EGMDPEEVAEEWVANNPELVENW 290
           +   P E A  ++ +N E+ + W
Sbjct: 303 KRTPPREAALTFLRDNREVWKAW 325