Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

 Score =  121 bits (304), Expect = 2e-32
 Identities = 78/275 (28%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 26  QSTDDTEKGTIKFGLPPWPGVTVKSNVVKVILEEQGYNVELNQLDAGITYAKLADG-DLD 84
           Q+ +  +  T++F    W  +TV +    V+LE  GY      +   +TY  LA G DLD
Sbjct: 20  QAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMISVPVTYKSLATGKDLD 79

Query: 85  VSLAGWLPTTHEEYWTQY--GNQLEMVHVNVGKTALGLAVPTYTYEAGIQSITDLNGNEE 142
           V L  W+PT   +   QY     +E V  N+      LAVP   Y+ G++  +D+   ++
Sbjct: 80  VFLGNWMPTMENDI-KQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFSDIPKFKK 138

Query: 143 LFDGKIIGIEPGAGIMSNTEKAIDSYSL----SGYELQSSSTPAMMAELARAINEDENIV 198
             DGKI GIEPG       +  ID  +     +G+++  SS   M++++ RA    E +V
Sbjct: 139 ELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGEALV 198

Query: 199 VTVWEPHSVFFKFDIKMLDDPEKVYG-DGDK--VYTIARTDFKDDYPEVYEFFQKFEVDP 255
              WEPH +  +F ++ L   +  +G D  K  V T  R  +  +   V +  +    + 
Sbjct: 199 FLGWEPHPMNTRFKMQYLTGGDDFFGPDFGKATVLTNTRKGYTQECSNVGQLLKNLSFEL 258

Query: 256 SVQSEWIYKYSDEGMDPEEVAEEWVANNPELVENW 290
             +S  +    D+ M PE  A++W+ +NP  ++ W
Sbjct: 259 KDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAW 293