Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

 Score =  129 bits (325), Expect = 6e-35
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 12/288 (4%)

Query: 8   AIFLLGLAVMFSGCVQSPQSTDDTEKGTIKFGLPPWPGVTVKSNVVKVILEEQGYNVELN 67
           A+F L L+   +    S     D +  T+K   P W  +   + V +++LE  GY V+++
Sbjct: 7   AVFALALSATTAHAADS-----DAQCSTVKMADPGWSDIASTNAVARLLLESLGYQVKID 61

Query: 68  QLDAGITYAKLADGDLDVSLAGWLPTT---HEEYWTQYGNQLEMVHVNVGKTALGLAVPT 124
            L   I Y  L DG +D  L  W+P     H+++       ++ +  N+  T   LAVP 
Sbjct: 62  SLAVPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIAN--GDVQQLSRNLEGTEFTLAVPD 119

Query: 125 YTYEAGIQSITDLNGNEELFDGKIIGIEPGAGIMSNTEKAIDS--YSLSGYELQSSSTPA 182
           Y + AG++   DL  +   FD K+ GI  GA    + +  ID   ++L  ++L  SS  A
Sbjct: 120 YVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQA 179

Query: 183 MMAELARAINEDENIVVTVWEPHSVFFKFDIKMLDDPEKVYGDGDKVYTIARTDFKDDYP 242
           M+A++ RA+ + + I    W PH +  K  +  L   EK +G   +VYT+ R  +    P
Sbjct: 180 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGSKGEVYTLTRKGYPQACP 239

Query: 243 EVYEFFQKFEVDPSVQSEWIYKYSDEGMDPEEVAEEWVANNPELVENW 290
              +     +    +++  + +  D+ +  +E A+ WV  +PE ++ W
Sbjct: 240 NAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGW 287