Pairwise Alignments

Query, 458 a.a., nitrogenase from Methanococcus maripaludis S2

Subject, 519 a.a., Nitrogenase molybdenum-iron protein beta chain from Xanthobacter sp. DMC5

 Score =  290 bits (742), Expect = 8e-83
 Identities = 170/463 (36%), Positives = 264/463 (57%), Gaps = 28/463 (6%)

Query: 3   EKKFA----VINPCKICQPMGAIFALMGVKNSMPLIHGSHGCSTYMRFQLGRHFKEAVNV 58
           EK FA     +NP K CQP+GA+F  +G ++++P +HGS GC  Y R  L RHFKE  + 
Sbjct: 54  EKNFAREALTVNPAKACQPLGAVFVAVGFEHTIPFVHGSQGCVAYYRSHLSRHFKEPSSC 113

Query: 59  ASSSMSEANAVLGGEENLKHAIRNVSKIYGPEIIGVTTSCLSETIGDDVEGIIRLFKTQN 118
            SSSM+E  AV GG  N+   + N   +Y P++I V+T+C++E IGDD+   I+  K + 
Sbjct: 114 VSSSMTEDAAVFGGLNNMIDGLANTYNMYKPKMIAVSTTCMAEVIGDDLNAFIKTAKEKG 173

Query: 119 DDLPEI-VPIS-TPSYKHTHVEGYDSTVKALVENL------ATPS---KPNSKLNVITGM 167
               E  VP + TP++  +HV GYD+ +K ++E+         P    +PN K+N I G 
Sbjct: 174 SVPQEYDVPFAHTPAFVGSHVTGYDNAIKGVLEHFWDGKAGTAPKLVREPNEKINFIGGF 233

Query: 168 --VSPGDIAETKRILREMGIESIILTDTSESMDAPFDGEVSFVSSAGTTVEELKDTANSF 225
              + G++ E KRI   MG++  IL D SE  D P DGE   +   GTT+EE  +  ++ 
Sbjct: 234 DGYTVGNLREVKRIFGLMGVDYTILGDNSEVFDTPTDGEFR-MYDGGTTLEEAANAVHAK 292

Query: 226 ATISLCKHANSAAKFLHEAYGINSVSPYLPIGLQSTDEFMNELCKLTNKEIPEQITRERG 285
           ATIS+ ++           +G   V+   P+G++ TDEF+  + +++ KEIPE++ +ERG
Sbjct: 293 ATISMQEYCTEKTLPFIANHGQEVVAFNHPVGVKGTDEFLMAIARISGKEIPEELAKERG 352

Query: 286 KLIDAMIDAHQHNFGRKVAIYGDPDVVVGFTRFVLELGMIPSIVCTGSESKTFVEDIKAV 345
           +L+DA+ D++ H  G+K AIYGDPD+ +G   F+LELG  P+ V   + ++ + + ++ +
Sbjct: 353 RLVDAIADSNAHIHGKKFAIYGDPDLCLGLASFLLELGAEPTHVLATNGNQKWADKVQKL 412

Query: 346 TKDSKH-KPVILAPG-DLYDLHQEIKKSKVDLLIGNSYGSRIAGAENIPLIRMGFPIYDR 403
              S   +   + PG DL+ +   +    VD LIGN+YG  +      PLIR+GFP++DR
Sbjct: 413 FDSSPFGQNCNVYPGRDLWHMRSLLFTEPVDFLIGNTYGKYLERDTGTPLIRIGFPVFDR 472

Query: 404 VGAQRITSLGYTAGIRLVDTITNTILDRYFDEFGWALNENTEV 446
               R    GY  G+     +  TILD+ FD     +++NT V
Sbjct: 473 HHHHRRPVWGYQGGM----NVLITILDKIFD----TIDQNTIV 507