Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 462 a.a., nitrogenase molybdenum-iron protein subunit beta from Methanococcus maripaludis S2

 Score = 48.5 bits (114), Expect = 5e-10
 Identities = 95/465 (20%), Positives = 173/465 (37%), Gaps = 65/465 (13%)

Query: 49  CAFAGVKGVITGAIKDVLHVVHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKHI 108
           C   G    ++G I+  + +VH   GC+ +      R+   P                 I
Sbjct: 21  CQPLGAMYAVSG-IERGMPLVHGSQGCSTFVRYGFARHFREPA---------------DI 64

Query: 109 VGTDLTESDVVFGGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAE 168
             T L E   VFGG   L   +   +  F   + + V  TC++ +IGDD+    K  + E
Sbjct: 65  AVTSLHEDAAVFGGRKNLISGLGNLAARFK-PDVMGVVTTCSSEIIGDDVAGFIKTAKVE 123

Query: 169 LGK----------DVVAFNAPGFAGPTQSKGHHVGNYTIFEKLVGTKEPPKTTDYDINLI 218
           + K           +V  N P F    Q KG+      I + L    EP    +  +N+I
Sbjct: 124 IAKKMGEEAANKIKIVQINTPSFV-EHQFKGYDNAIKAIVDTLA---EPKDEENGKLNII 179

Query: 219 GEYNIDGDYWVLEKYFEDMGI-NVLSKFTGDATHGEL--------CWMHKAKLSLVRCQR 269
                 GD   ++     MG+  +L   T D     L         +  K    L   Q 
Sbjct: 180 PGIVNPGDIREIKHMLSLMGVEGILLTDTSDPFDSPLRPSKADKNPYYQKGGTPLADLQD 239

Query: 270 SATYVAKL------------IEEKYGVPYLKVDF-FGPEYCAENLRAVGKYFGKEIEAEA 316
            A  +  +            +E+KY +P    +   G +     +R V K+ G ++  E 
Sbjct: 240 CANSLGTISLANYANSAPASLEKKYNMPSKVSEAPIGIQNTDSFIRTVKKFTGNDVTDE- 298

Query: 317 VIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQYLGMDVVALSGLFEHED 376
           ++ +    I    D     L G+K+ I      +  +++ + + LGM    +    ++E 
Sbjct: 299 ILDERGIVIDAMADVASRYLFGRKVAIYGDPSITVGMARFVAE-LGMIPKVVCTGVKNEY 357

Query: 377 GYEKMQERAKDGTIIIDD--PNTLEMEEVVEKYQP-EIVLGGIKEKYFFHKLGVPSVMIH 433
               +++ AK+    ID      L   +V  K  P ++++G    +     LG+P   + 
Sbjct: 358 FVNDLKKVAKESDEDIDALFGQDLRALDVYLKENPVDLMIGSSDGRLMAKDLGIPLYRVG 417

Query: 434 -------SYENGPYIGFEGFVNMARDIYTAIYNPAWKLMEFEEEE 471
                   Y+  P IG+ G +N+   I   I +  ++  +++ ++
Sbjct: 418 YPVYDRVGYQRRPIIGYNGALNLVDGITNTILDKYYETQDWKLQQ 462