Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 180 a.a., electron transport protein HydN from Serratia liquefaciens MT49
Score = 53.1 bits (126), Expect = 6e-12
Identities = 49/163 (30%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 220 LNEMVAVPPKGCPACGLCKAACPV------DAIELVVEYASPKPITDEGI-VWDEEKCAY 272
+N + PK C C C+ AC + D L +P+ +G+ V C
Sbjct: 1 MNRFIIADPKKCIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVSTAVLCRQ 60
Query: 273 C--GPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRI--- 327
C PCA CPN AI+ N L M R CI C CV +CP A+ +
Sbjct: 61 CEDAPCANVCPNGAISRTNGMVLVMQER-----------CIGCKTCVVACPYGAMEVITR 109
Query: 328 GKIIHNG----KEYERIE-FSPNLC---DSCGKCIETCPYDML 362
+ NG E+ E +LC DS C+ETCP + L
Sbjct: 110 PVVRQNGAMMSATSEKAEAHKCDLCIGRDSGPACMETCPTNAL 152
Score = 46.6 bits (109), Expect = 5e-10
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 94 CVGCMKCVDACPDSYVGMEGV-----VEPAKRNITLPKEPIAVTEDCVGC--GVCISECP 146
C+GC C AC ++ + + A R + ++ C C C + CP
Sbjct: 12 CIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVSTAVLCRQCEDAPCANVCP 71
Query: 147 VGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDS------ 200
GA+S +V ++ CI C C CP+ A+ V + +++ ++ + +
Sbjct: 72 NGAISRTNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVVRQNGAMMSATSEKAEAHKC 131
Query: 201 DLCIGCGD---CTDKCPRDLI 218
DLCIG C + CP + +
Sbjct: 132 DLCIGRDSGPACMETCPTNAL 152
Score = 45.8 bits (107), Expect = 9e-10
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 31/172 (18%)
Query: 158 VVDKDSCIYCSICAQTCPW-----------NAIFVAGKKSPKRDKNIVKFSVDSDLCIGC 206
+ D CI C C C NA A + + N+ + LC C
Sbjct: 6 IADPKKCIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVST----AVLCRQC 61
Query: 207 GD--CTDKCPRDLIV-LNEMVAVPPKGCPACGLCKAACPVDAIELVV-----EYASPKPI 258
D C + CP I N MV V + C C C ACP A+E++ + +
Sbjct: 62 EDAPCANVCPNGAISRTNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVVRQNGAMMSA 121
Query: 259 TDEGIVWDEEKCAYC-----GP-CAIKCPNNAITVVNPKGLEMPSRKKTEKA 304
T E + KC C GP C CP NA+ V+ L+ + +K +A
Sbjct: 122 TSEKA--EAHKCDLCIGRDSGPACMETCPTNALHCVDRNMLQEMNAEKRRRA 171
Score = 44.3 bits (103), Expect = 3e-09
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 38/155 (24%)
Query: 199 DSDLCIGCGDCTDKC------PRDLIVLNEMVAVPP----KG--------CPAC--GLCK 238
D CIGC C C +D+ LN P KG C C C
Sbjct: 8 DPKKCIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVSTAVLCRQCEDAPCA 67
Query: 239 AACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAI-----TVVNPKGL 293
CP AI T+ ++ +E+C C C + CP A+ VV G
Sbjct: 68 NVCPNGAISR----------TNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVVRQNGA 117
Query: 294 EMPSRKKTEKANEFKMCI---RCGACVQSCPNDAL 325
M + + +A++ +CI AC+++CP +AL
Sbjct: 118 MMSATSEKAEAHKCDLCIGRDSGPACMETCPTNAL 152
Score = 35.0 bits (79), Expect = 2e-06
Identities = 40/176 (22%), Positives = 56/176 (31%), Gaps = 69/176 (39%)
Query: 9 CYMCKACENSC--------PTEALKLNPFK---------------VCQLCGN--CVNVCP 43
C C+ CE +C AL F +C+ C + C NVCP
Sbjct: 12 CIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVSTAVLCRQCEDAPCANVCP 71
Query: 44 NDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVDA 103
N A++ +T + +C +GC CV A
Sbjct: 72 NGAIS--------RTNGMVLVMQERC-------------------------IGCKTCVVA 98
Query: 104 CPDSYVGMEGVVEPAKR------NITLPKEPIAVTEDCVGCG---VCISECPVGAL 150
CP Y ME + P R + T K + C+G C+ CP AL
Sbjct: 99 CP--YGAMEVITRPVVRQNGAMMSATSEKAEAHKCDLCIGRDSGPACMETCPTNAL 152
Score = 34.3 bits (77), Expect = 3e-06
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 35/151 (23%)
Query: 263 IVWDEEKCAYCGPCAIKC-----PNNAITVVNPKGLEMPSRK-KTEKANEFKMCIRC--G 314
I+ D +KC C C I C + I+ +N K + +C +C
Sbjct: 5 IIADPKKCIGCRTCEIACVMAHSESQDISALNATSFAPRLHVIKGVNVSTAVLCRQCEDA 64
Query: 315 ACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLK----------- 363
C CPN A+ + + C C C+ CPY ++
Sbjct: 65 PCANVCPNGAI--------SRTNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVVRQNG 116
Query: 364 --LTGKSEKPLEGFCVMCL------KCIEAC 386
++ SEK C +C+ C+E C
Sbjct: 117 AMMSATSEKAEAHKCDLCIGRDSGPACMETC 147
Score = 28.5 bits (62), Expect = 2e-04
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 24/88 (27%)
Query: 1 MIKINTEDCYMCKACENSCPTEALKLNPFKVCQLCGNCVNVCPNDALNLREIELNGKTIK 60
M+ + E C CK C +CP A+++ V V N A+ ++ + K
Sbjct: 81 MVLVMQERCIGCKTCVVACPYGAMEVITRPV---------VRQNGAM------MSATSEK 125
Query: 61 QIAYFPTKCDLC------GECVKVCPNN 82
A+ KCDLC C++ CP N
Sbjct: 126 AEAH---KCDLCIGRDSGPACMETCPTN 150