Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., formate hydrogenlyase complex iron-sulfur protein (NCBI) from Escherichia coli BW25113

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 17/83 (20%)

Query: 114 VVEPAKRNITLPKEPIAVTED-----------CVGCGVCISECPVGALSIEGEKAV---- 158
           V++      + P EPIAV ++           C+GC  C++ CP  AL++E + A     
Sbjct: 8   VIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELA 67

Query: 159 --VDKDSCIYCSICAQTCPWNAI 179
              +   CI+C  C + CP  AI
Sbjct: 68  WEFNLGHCIFCGRCEEVCPTAAI 90



 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 308 KMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGK 367
           + CI C ACV +CP++AL +   +  G+     EF+   C  CG+C E CP   +KL+ +
Sbjct: 38  QQCIGCAACVNACPSNALTVETDLATGE--LAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95

Query: 368 SE 369
            E
Sbjct: 96  YE 97



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 203 CIGCGDCTDKCPRDLIVLNEMVAVPPKG-------CPACGLCKAACPVDAIELVVEYASP 255
           CIGC  C + CP + + +   +A            C  CG C+  CP  AI+L  EY   
Sbjct: 40  CIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEY--- 96

Query: 256 KPITDEGIVWDEE-----------KCAYCG-PCAI-KCPNNAITVVNPKGLEMPSRKKTE 302
                E  VW +E            C  C  P A+ K  + AI ++   G    SR +  
Sbjct: 97  -----ELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNG---DSRAENH 148

Query: 303 KANEFKMCIRCGACVQSCPNDALRI 327
           +   F+ C  C       P+D + +
Sbjct: 149 R-ESFETCPECKRQKCLVPSDRIEL 172



 Score = 40.4 bits (93), Expect = 4e-08
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 5  NTEDCYMCKACENSCPTEALKLN----------PFKV--CQLCGNCVNVCPNDALNL-RE 51
          N + C  C AC N+CP+ AL +            F +  C  CG C  VCP  A+ L +E
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95

Query: 52 IEL 54
           EL
Sbjct: 96 YEL 98



 Score = 40.0 bits (92), Expect = 5e-08
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 268 EKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKM--CIRCGACVQSCPNDAL 325
           ++C  C  C   CP+NA+TV              E A EF +  CI CG C + CP  A+
Sbjct: 38  QQCIGCAACVNACPSNALTVET-------DLATGELAWEFNLGHCIFCGRCEEVCPTAAI 90

Query: 326 RIGK 329
           ++ +
Sbjct: 91  KLSQ 94



 Score = 37.0 bits (84), Expect = 4e-07
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 308 KMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKL--- 364
           K  I+ G    S P + + + K      E      +P  C  C  C+  CP + L +   
Sbjct: 6   KKVIKTGTATSSYPLEPIAVDKNFRGKPEQ-----NPQQCIGCAACVNACPSNALTVETD 60

Query: 365 --TGKSEKPLE-GFCVMCLKCIEACDKA 389
             TG+       G C+ C +C E C  A
Sbjct: 61  LATGELAWEFNLGHCIFCGRCEEVCPTA 88



 Score = 36.6 bits (83), Expect = 6e-07
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 66  PTKCDLCGECVKVCPNN-LKIENDKLK---------GFCVGCMKCVDACPDSYVGMEGVV 115
           P +C  C  CV  CP+N L +E D            G C+ C +C + CP + + +    
Sbjct: 37  PQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEY 96

Query: 116 EPA 118
           E A
Sbjct: 97  ELA 99



 Score = 35.4 bits (80), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGA--LS 151
           C+GC  CV+ACP + + +E  +   +               C+ CG C   CP  A  LS
Sbjct: 40  CIGCAACVNACPSNALTVETDLATGELAWEFN------LGHCIFCGRCEEVCPTAAIKLS 93

Query: 152 IEGEKAVVDKD 162
            E E AV  K+
Sbjct: 94  QEYELAVWKKE 104



 Score = 29.6 bits (65), Expect = 7e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 3  KINTEDCYMCKACENSCPTEALKLN 27
          + N   C  C  CE  CPT A+KL+
Sbjct: 69 EFNLGHCIFCGRCEEVCPTAAIKLS 93