Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 205 a.a., hydrogenase 4 Fe-S subunit (VIMSS) from Escherichia coli BW25113
Score = 54.3 bits (129), Expect = 3e-12
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 93 FCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPK-EPIAVTEDCVGC--GVCISECPVGA 149
+C GC C+ AC D + +G+ + + + L K I C C C+ CPV A
Sbjct: 11 WCTGCNTCLAACSDVHK-TQGLQQHPR--LALAKTSTITAPVVCHHCEEAPCLQVCPVNA 67
Query: 150 LSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDC 209
+S + +++ CI C +CA CP+ AI +G + V F + L D
Sbjct: 68 ISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYV-FQAEGSL----KDG 122
Query: 210 TDKCPRDLIVLN-----EMVAVPPKGC---PACGLCKAACPVDAIELV 249
+ P +L + VAV C P C ACP A+ L+
Sbjct: 123 EENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRLI 170
Score = 40.8 bits (94), Expect = 3e-08
Identities = 39/169 (23%), Positives = 56/169 (33%), Gaps = 55/169 (32%)
Query: 203 CIGCGDCTDKC------------PRDLIVLNEMVAVPPKGCPAC--GLCKAACPVDAIEL 248
C GC C C PR L + P C C C CPV+AI
Sbjct: 12 CTGCNTCLAACSDVHKTQGLQQHPR-LALAKTSTITAPVVCHHCEEAPCLQVCPVNAISQ 70
Query: 249 VVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFK 308
D+ I +E C C CA+ CP AI+ + + ++ + K
Sbjct: 71 ----------RDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLK 120
Query: 309 ---------------------MCIRCG---------ACVQSCPNDALRI 327
+ ++C ACV++CPN ALR+
Sbjct: 121 DGEENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRL 169
Score = 37.7 bits (86), Expect = 3e-07
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 220 LNEMVAVPPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYC--GPCA 277
+N V P C C C AAC ++ + + C +C PC
Sbjct: 1 MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCL 60
Query: 278 IKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDAL 325
CP NAI+ R + NE +CI C C CP A+
Sbjct: 61 QVCPVNAIS----------QRDDAIQLNE-SLCIGCKLCAVVCPFGAI 97
Score = 36.6 bits (83), Expect = 6e-07
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 270 CAYCGPCAIKCPNNAITVVNPKGLEMPSR---KKTEKANEFKMCIRC--GACVQSCPNDA 324
C C C C + V +GL+ R KT +C C C+Q CP +A
Sbjct: 12 CTGCNTCLAACSD----VHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQVCPVNA 67
Query: 325 LRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTG 366
+ + + I+ + +LC C C CP+ + +G
Sbjct: 68 I--------SQRDDAIQLNESLCIGCKLCAVVCPFGAISASG 101
Score = 35.0 bits (79), Expect = 2e-06
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 32 CQLCGNCVNVCPNDALNLREIELN-----GKTIKQIAYFPTKCDLCGE--CVKVCPNNLK 84
C C C+ C +D + ++ + KT A P C C E C++VCP N
Sbjct: 12 CTGCNTCLAAC-SDVHKTQGLQQHPRLALAKTSTITA--PVVCHHCEEAPCLQVCPVNAI 68
Query: 85 IENDKL----KGFCVGCMKCVDACPDSYVGMEG 113
+ D + C+GC C CP + G
Sbjct: 69 SQRDDAIQLNESLCIGCKLCAVVCPFGAISASG 101
Score = 30.0 bits (66), Expect = 6e-05
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEF--SPNLCDSCGK--CIETCPYDMLKLT 365
C C C+ +C + G H + +P +C C + C++ CP + +
Sbjct: 12 CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQVCPVNAISQR 71
Query: 366 GKSEKPLEGFCVMCLKCIEAC 386
+ + E C+ C C C
Sbjct: 72 DDAIQLNESLCIGCKLCAVVC 92
Score = 29.3 bits (64), Expect = 1e-04
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 2 IKINTEDCYMCKACENSCPTEALKLNPFKVCQLCGNCVNVCPNDALNLREIELNGKTIKQ 61
I++N C CK C CP A+ + + V +L++ E N T
Sbjct: 75 IQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEG---SLKDGEENAPTQHA 131
Query: 62 IAYF-------PTKCDLCG------ECVKVCPN 81
+ + KCDLC CV+ CPN
Sbjct: 132 LLRWEPGVQTVAVKCDLCDFLPEGPACVRACPN 164
Score = 23.5 bits (49), Expect = 0.006
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 32 CQLCG------NCVNVCPNDALNL 49
C LC CV CPN AL L
Sbjct: 146 CDLCDFLPEGPACVRACPNQALRL 169