Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 192 a.a., electron transport complex protein RnfB (NCBI) from Escherichia coli BW25113
Score = 52.4 bits (124), Expect = 1e-11
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 157 AVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRD 216
AV+D+++CI C+ C Q CP +AI A + +V SDLC GC C D CP
Sbjct: 110 AVIDENNCIGCTKCIQACPVDAIVGATR---------AMHTVMSDLCTGCNLCVDPCPTH 160
Query: 217 LIVLNEMVAVP 227
I L + P
Sbjct: 161 CISLQPVAETP 171
Score = 44.7 bits (104), Expect = 2e-09
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 71 LCGECVKVCPNNLKIENDKLKGFCVGCMKCVDACP-DSYVGMEGVVEPAKRNITLPKEPI 129
L GE ++ P + D+ C+GC KC+ ACP D+ VG + ++
Sbjct: 96 LDGEAQEITPARMVAVIDENN--CIGCTKCIQACPVDAIVGATRAMHTVMSDL------- 146
Query: 130 AVTEDCVGCGVCISECPVGALSIE 153
C GC +C+ CP +S++
Sbjct: 147 -----CTGCNLCVDPCPTHCISLQ 165
Score = 41.6 bits (96), Expect = 2e-08
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 125 PKEPIAVTED--CVGCGVCISECPVGALSIEGEKAV--VDKDSCIYCSICAQTCPWNAI 179
P +AV ++ C+GC CI CPV A+ + +A+ V D C C++C CP + I
Sbjct: 105 PARMVAVIDENNCIGCTKCIQACPVDAI-VGATRAMHTVMSDLCTGCNLCVDPCPTHCI 162
Score = 39.3 bits (90), Expect = 9e-08
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGKSE 369
CI C C+Q+CP DA+ G +LC C C++ CP + L +E
Sbjct: 117 CIGCTKCIQACPVDAI-------VGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAE 169
Query: 370 KP 371
P
Sbjct: 170 TP 171
Score = 38.5 bits (88), Expect = 2e-07
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 22 EALKLNPFKV--CQLCGNCVNVCPNDALNLREIELNGKT-----IKQIAYFP-TKCDLCG 73
EA+ N K+ C G V + + LN+ L+G+ + +A C C
Sbjct: 62 EAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGCT 121
Query: 74 ECVKVCPNNLKIENDK-----LKGFCVGCMKCVDACPDSYVGMEGVVE 116
+C++ CP + + + + C GC CVD CP + ++ V E
Sbjct: 122 KCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAE 169
Score = 33.5 bits (75), Expect = 5e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 345 NLCDSCGKCIETCPYD-MLKLTGKSEKPLEGFCVMCLKCIEAC 386
N C C KCI+ CP D ++ T + C C C++ C
Sbjct: 115 NNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPC 157
Score = 32.0 bits (71), Expect = 1e-05
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 4 INTEDCYMCKACENSCP-------TEALKLNPFKVCQLCGNCVNVCPNDALNLREI 52
I+ +C C C +CP T A+ +C C CV+ CP ++L+ +
Sbjct: 112 IDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPV 167
Score = 29.6 bits (65), Expect = 7e-05
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 223 MVAV-PPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCP 281
MVAV C C C ACPVDAI + A ++D C C C CP
Sbjct: 108 MVAVIDENNCIGCTKCIQACPVDAI-VGATRAMHTVMSD--------LCTGCNLCVDPCP 158
Query: 282 NNAITV 287
+ I++
Sbjct: 159 THCISL 164
Score = 28.9 bits (63), Expect = 1e-04
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 264 VWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPND 323
V DE C C C CP +AI + S +C C CV CP
Sbjct: 111 VIDENNCIGCTKCIQACPVDAIVGATRAMHTVMS----------DLCTGCNLCVDPCPTH 160
Query: 324 ALRI 327
+ +
Sbjct: 161 CISL 164
Score = 25.4 bits (54), Expect = 0.001
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1 MIKINTEDCYMCKACENSCPTEALKLNP 28
M + ++ C C C + CPT + L P
Sbjct: 139 MHTVMSDLCTGCNLCVDPCPTHCISLQP 166
Score = 24.6 bits (52), Expect = 0.002
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 373 EGFCVMCLKCIEAC 386
E C+ C KCI+AC
Sbjct: 114 ENNCIGCTKCIQAC 127