Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 203 a.a., formate hydrogenlyase subunit HycB from Escherichia coli ECRC62

 Score = 56.2 bits (134), Expect = 8e-13
 Identities = 52/188 (27%), Positives = 68/188 (36%), Gaps = 41/188 (21%)

Query: 199 DSDLCIGCGDCTDKC------------PRDLIVLNEMVAVPPKGCPAC--GLCKAACPVD 244
           DS LCIGC  C   C            PR  ++LNE  + P   C  C    C   CPV+
Sbjct: 8   DSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQL-CHHCEDAPCAVVCPVN 66

Query: 245 AIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKA 304
           AI  V          D  +  +E  C  C  C I CP  AI     + L++P+   T KA
Sbjct: 67  AITRV----------DGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKA 116

Query: 305 NEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLC--DSCG-KCIETCPYDM 361
                           P    RI  ++        I    +LC  D  G  C+  CP   
Sbjct: 117 -------------PPAPPAPARISTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKA 163

Query: 362 LKLTGKSE 369
           L L   ++
Sbjct: 164 LHLVDNTD 171



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGC--GVCISECPVGALS 151
           C+GC  C  AC +++    G+    +  + L  E  +  + C  C    C   CPV A++
Sbjct: 12  CIGCHTCEAACSETH-RQHGLQSMPRLRVML-NEKESAPQLCHHCEDAPCAVVCPVNAIT 69

Query: 152 IEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKK 185
                  +++  C+ C +C   CP+ AI  +G +
Sbjct: 70  RVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSR 103



 Score = 36.2 bits (82), Expect = 8e-07
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 220 LNEMVAVPPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYC--GPCA 277
           +N  V      C  C  C+AAC     +  ++      +         + C +C   PCA
Sbjct: 1   VNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCA 60

Query: 278 IKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDAL 325
           + CP NAIT V+             + NE  +C+ C  C  +CP  A+
Sbjct: 61  VVCPVNAITRVD----------GAVQLNE-SLCVSCKLCGIACPFGAI 97



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 309 MCIRCGACVQSCPNDALRIG-------KIIHNGKEYERIEFSPNLCDSC--GKCIETCPY 359
           +CI C  C  +C     + G       +++ N KE      +P LC  C    C   CP 
Sbjct: 11  LCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKES-----APQLCHHCEDAPCAVVCPV 65

Query: 360 DMLKLTGKSEKPLEGFCVMCLKCIEAC 386
           + +     + +  E  CV C  C  AC
Sbjct: 66  NAITRVDGAVQLNESLCVSCKLCGIAC 92



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 2   IKINTEDCYMCKACENSCPTEALKLNPFKVCQLCGNC-VNVCPNDALNLREIELNGKTIK 60
           +++N   C  CK C  +CP  A++ +  +   +  N      P        I      + 
Sbjct: 75  VQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAPPAPARISTLLDWVP 134

Query: 61  QIAYFPTKCDLCG------ECVKVCP 80
            I     KCDLC        CV++CP
Sbjct: 135 GIRAIAVKCDLCSFDEQGPACVRMCP 160



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 66  PTKCDLCGE--CVKVCPNNLKIENDKL----KGFCVGCMKCVDACPDSYVGMEG---VVE 116
           P  C  C +  C  VCP N     D      +  CV C  C  ACP   +   G   +  
Sbjct: 48  PQLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDI 107

Query: 117 PAKRNITLPKEPIA 130
           PA  N   PK P A
Sbjct: 108 PA--NANTPKAPPA 119