Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., 4Fe-4S dicluster domain-containing protein from Dickeya dianthicola ME23

 Score = 56.6 bits (135), Expect = 5e-13
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 220 LNEMVAVPPKGCPACGLCKAACPV-----DAIELVVEYASPKPITDEGI-VWDEEKCAYC 273
           +N  V   P+ C  C  C+ AC +     +   L  E+ +P+    +G+ V    +C +C
Sbjct: 1   MNRFVLADPRKCIGCRTCEVACVLAHSDGNPSSLSPEHFTPRLKVVKGLNVSTTIQCRHC 60

Query: 274 --GPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRI---- 327
              PCA  CPN AI            R + EK      CI C  CV +CP  A+ +    
Sbjct: 61  EDAPCANVCPNGAIVHAGDH-----IRVQQEK------CIGCKTCVVACPYGAMTVISKP 109

Query: 328 -GKIIHNGKEYERIEFSPNLCDSCG------KCIETCPYDMLKLTGKSE 369
             +I H       I+   + CD C        C+E CP   L+L  + +
Sbjct: 110 VARISHYQTLGNCIKAEAHKCDLCEGRANGPACVEVCPTKALRLISRED 158



 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 94  CVGCMKCVDACPDSYV-GMEGVVEP---AKRNITLPKEPIAVTEDCVGC--GVCISECPV 147
           C+GC  C  AC  ++  G    + P     R   +    ++ T  C  C    C + CP 
Sbjct: 12  CIGCRTCEVACVLAHSDGNPSSLSPEHFTPRLKVVKGLNVSTTIQCRHCEDAPCANVCPN 71

Query: 148 GALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDK-----NIVKFSVDS-D 201
           GA+   G+   V ++ CI C  C   CP+ A+ V  K   +        N +K      D
Sbjct: 72  GAIVHAGDHIRVQQEKCIGCKTCVVACPYGAMTVISKPVARISHYQTLGNCIKAEAHKCD 131

Query: 202 LCIGCGD---CTDKCP 214
           LC G  +   C + CP
Sbjct: 132 LCEGRANGPACVEVCP 147



 Score = 40.0 bits (92), Expect = 5e-08
 Identities = 42/158 (26%), Positives = 60/158 (37%), Gaps = 41/158 (25%)

Query: 199 DSDLCIGCGDCTDKC------------------PRDLIV--LNEMVAVPPKGCPACGLCK 238
           D   CIGC  C   C                  PR  +V  LN    +  + C     C 
Sbjct: 8   DPRKCIGCRTCEVACVLAHSDGNPSSLSPEHFTPRLKVVKGLNVSTTIQCRHCEDAP-CA 66

Query: 239 AACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSR 298
             CP  AI    ++          I   +EKC  C  C + CP  A+TV++ K +   S 
Sbjct: 67  NVCPNGAIVHAGDH----------IRVQQEKCIGCKTCVVACPYGAMTVIS-KPVARISH 115

Query: 299 KKT------EKANEFKMC---IRCGACVQSCPNDALRI 327
            +T       +A++  +C       ACV+ CP  ALR+
Sbjct: 116 YQTLGNCIKAEAHKCDLCEGRANGPACVEVCPTKALRL 153



 Score = 33.5 bits (75), Expect = 5e-06
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 24/85 (28%)

Query: 2   IKINTEDCYMCKACENSCPTEALKLNPFKVCQLCGNCVNVCPNDALNLREIELNGKTIKQ 61
           I++  E C  CK C  +CP  A+                V       +   +  G  IK 
Sbjct: 81  IRVQQEKCIGCKTCVVACPYGAM---------------TVISKPVARISHYQTLGNCIKA 125

Query: 62  IAYFPTKCDLC------GECVKVCP 80
            A+   KCDLC        CV+VCP
Sbjct: 126 EAH---KCDLCEGRANGPACVEVCP 147



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 39/177 (22%), Positives = 57/177 (32%), Gaps = 68/177 (38%)

Query: 9   CYMCKACENSCPTEALKLNPFKV----------------------CQLCGN--CVNVCPN 44
           C  C+ CE +C       NP  +                      C+ C +  C NVCPN
Sbjct: 12  CIGCRTCEVACVLAHSDGNPSSLSPEHFTPRLKVVKGLNVSTTIQCRHCEDAPCANVCPN 71

Query: 45  DALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVDAC 104
            A                             +    ++++++ +K    C+GC  CV AC
Sbjct: 72  GA-----------------------------IVHAGDHIRVQQEK----CIGCKTCVVAC 98

Query: 105 PDSYVGMEGVVEPAKR---NITLPKEPIAVTEDCVGC------GVCISECPVGALSI 152
           P  Y  M  + +P  R     TL     A    C  C        C+  CP  AL +
Sbjct: 99  P--YGAMTVISKPVARISHYQTLGNCIKAEAHKCDLCEGRANGPACVEVCPTKALRL 153



 Score = 26.2 bits (56), Expect = 8e-04
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 308 KMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNL-------------CDSC--GK 352
           + CI C  C  +C      +     N        F+P L             C  C    
Sbjct: 10  RKCIGCRTCEVACV-----LAHSDGNPSSLSPEHFTPRLKVVKGLNVSTTIQCRHCEDAP 64

Query: 353 CIETCPYDMLKLTGKSEKPLEGFCVMCLKCIEACDKAKKSALS 395
           C   CP   +   G   +  +  C+ C  C+ AC     + +S
Sbjct: 65  CANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGAMTVIS 107