Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 485 a.a., Periplasmic [NiFeSe] hydrogenase large subunit from Xanthobacter sp. DMC5

 Score = 70.9 bits (172), Expect = 9e-17
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           +L + P  RVEG  +V L   D G + +        RGFE+ LEGR   DA V  PRICG
Sbjct: 7   RLVVGPFNRVEGDLEVRLDVAD-GAVRQAFVSSPLFRGFERILEGRDPRDALVIAPRICG 65

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLM----- 117
           IC VS + A+A A+  + GV       +  NL+    NV  H  HF +   PD       
Sbjct: 66  ICSVSQSHAAALALAALEGVVPTDNGRVATNLILATENVADHLTHFHVFFMPDFARAAYA 125

Query: 118 -FPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPL 176
             P   +A +R     A+  +  V++A++ R     ++  + GR  H +    GG +K  
Sbjct: 126 DRPWFAEAERR---FKAAHGLS-VREALATRTTLLHVMGLLAGRWPHTLALQPGGVAKGA 181

Query: 177 TEEERDELL 185
              ++  LL
Sbjct: 182 DARDKMRLL 190



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 365 GEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQK--VAEKYIKTPE 422
           G   G  EA RG L  H+   ++G IT   ++  T  N    D   Q   +    +  P 
Sbjct: 401 GRAFGLTEAARGAL-GHWMVVERGRITRYQIIAPTTWNFSPRDASGQPGPLETALVGAPV 459

Query: 423 ---DAKPHVLNHMEMVIRAYDPCLSCATH 448
              +  P  + H   ++R++DPC+ C  H
Sbjct: 460 RQGETTPLAVQH---IVRSFDPCMVCTVH 485