Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 618 a.a., nickel-dependent hydrogenase large subunit from Variovorax sp. OAS795

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 43/113 (38%), Positives = 64/113 (56%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ ++PVTR+EGH +  ++ D +  +          RG E  L+GR   DA  F  RICG
Sbjct: 17  RIVVDPVTRIEGHMRCEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICG 76

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPD 115
           +C   H LAS RAV++  G+ IPK A ++R +M +    H HA+HF  L + D
Sbjct: 77  VCTGCHALASVRAVEDALGIAIPKNAYLIREIMAKTLQEHDHAVHFYHLHALD 129



 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 316 TFGKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDLVGE--GVGCLEA 373
           T G+     +   Y   + L    EL+      D       + +P     E  GVG + A
Sbjct: 469 TIGRTLARALEAQYCAEMMLEDFQELVANIKAGDTSTANVEKWDPATWPKEAKGVGTVAA 528

Query: 374 PRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVA-EKYIKTPEDAKPHVLNHM 432
           PRG L H  +  D G I +   VV T  N    D   Q  A E  +     A P     +
Sbjct: 529 PRGALGHWIRIKD-GRIENYQCVVPTTWNGSPRDTKGQIGAFEASLMNTPMADPEQPVEI 587

Query: 433 EMVIRAYDPCLSCATHTI--DGKE 454
              + ++DPCL+C+TH +  DG+E
Sbjct: 588 LRTLHSFDPCLACSTHVMSPDGQE 611