Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 593 a.a., NADH-quinone oxidoreductase subunit C/D from Pseudomonas putida KT2440

 Score = 44.7 bits (104), Expect = 9e-09
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 31/169 (18%)

Query: 15  HG--KVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGICQVSHNLAS 72
           HG  ++ L  D    +D V       RG EK  E +       +T RI  +  V +NL  
Sbjct: 222 HGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPY 281

Query: 73  ARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGML-----ASPDLMFPMTDDALKR 127
             AV+ + G+K+P+  D++R ++ +   + SH L  G       A   + F  TD     
Sbjct: 282 VLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAMTPVFFTFTD----- 336

Query: 128 NVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPL 176
                              R+   T+I+ + G  +HP    +GG +  L
Sbjct: 337 -------------------RQRAYTVIEAITGFRLHPAWYRIGGVAHDL 366