Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 97/420 (23%), Positives = 159/420 (37%), Gaps = 99/420 (23%)

Query: 39  RGFEKFLEGRYIEDAPVFTPRICGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQA 98
           RG E+ +EG++       + R+CGIC   H  + A  ++N+  +++P+ A  LR +  + 
Sbjct: 40  RGIERIMEGKHYLKCIHLSERVCGICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCEL 99

Query: 99  SNVHSHALHFGMLASPDLMFPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVG 158
             +HSH     ++A+      +  + L   +L V    MD              +++ + 
Sbjct: 100 ERIHSH-----LIAAAVYNLTIEHETLGIWMLNVRESIMD--------------LLELIT 140

Query: 159 GRAIHPVTAVVGGQSKPLTEEERDELLKMSENLVDTAERTLVVGKQLLEGLKEQDLLELG 218
           G  ++    VVGG    L +E  D++ K     +D  E  +   K ++E  +   L+ + 
Sbjct: 141 GNRVNMGFNVVGGVRLDLNKEILDKIHKK----IDEFEEDV---KNIIEVFETGPLIGM- 192

Query: 219 YFESYHMGMVNNGAQDIYEGKIRVVNPEGKIEYEYEPSEYLNYMSEGVRPYSYLKFPYLT 278
              S H+G +  G ++I   K R   P  +              + G+ P S        
Sbjct: 193 --RSKHIGKI--GYKEIM--KTRAAGPVAR--------------ASGI-PES-------- 223

Query: 279 EKGPVDGVYRVNTLSRLNVCDRMPTPIAQKYYEEFVKTFGKPAHHPMLFHYARLI----E 334
                D   R  T   LN                      KP       +YAR++    E
Sbjct: 224 -----DWRIRHETYKALNF---------------------KPDWRNEGDNYARMMVRHDE 257

Query: 335 LISSAELIRKFLEDDAIVGTDIRVEPTDLVGEGVGCLEAPRGTLVHHFKTDDKGIITDAN 394
           +++S ELIR+ LE  A     +R +      EG    EA RG + +     D G+I    
Sbjct: 258 VLTSVELIRRALEHYAESSGIVRNKAEIRATEGEWYNEAHRGEVYYKIAITDGGLIKRII 317

Query: 395 LVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLNHMEMVIRAYDPCLSCATHTIDGKE 454
           +   TV N  A      K   K   T  DA             + DPC+SC   TI  K+
Sbjct: 318 IRTPTVMNLEAY-----KYMIKDCPTIADAVA--------TYTSIDPCVSCTERTIQLKD 364