Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 481 a.a., uptake hydrogenase from Magnetospirillum magneticum AMB-1

 Score = 94.4 bits (233), Expect = 8e-24
 Identities = 127/502 (25%), Positives = 196/502 (39%), Gaps = 81/502 (16%)

Query: 2   TKLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRIC 61
           T+L + P  RVEG  +VTL   D G++ +   +    RGFE+ L GR   DA V  PRIC
Sbjct: 6   TRLIVGPFNRVEGDLEVTLDVQD-GRVAEARVNAPLYRGFEQILLGRPPSDALVIAPRIC 64

Query: 62  GICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLM---- 117
           GIC VS ++ASARA+  +    +P+   +  NL+    N   H  HF +  +PDL     
Sbjct: 65  GICSVSQSVASARALAGLGPAAMPENGTLATNLILACENAADHLTHFMLFFAPDLARSCY 124

Query: 118 --FPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKP 175
              P    A +R     A+ + +  +  +  R     ++  + G+  H +    GG +K 
Sbjct: 125 GGRPWFAAARRR----FAAGDGECARALLPARARFLHLMGLLAGKWPHSLALQPGGVTKA 180

Query: 176 LTEEERDELLKMSENLVDTAERTLVVGK----QLLEGLKEQDLL------ELGYFESY-H 224
           +   E+  LL +     +  E  L          L+GL   D        E G F  + H
Sbjct: 181 VDPGEKIRLLSILAEFREALETHLFADSLEAIAALDGLPALDAWADAAPPEAGDFRLFLH 240

Query: 225 MG--------------MVNNGAQDIYEGKIRVVNPEGKIEYEYEPSEYLNYMSEGV---- 266
           +                +++G+  ++   +         +      ++ +   EG     
Sbjct: 241 IARDLDFTGLGAGPGRFISSGSFGLFAPGVWAQGASTPFDPAQVSEDHAHSWMEGAILAP 300

Query: 267 ------------RPYSYLKFPYLTEKGPVDG-VYRVNTLSRLNVCDRMPTPIAQKYYEEF 313
                         YS+ K P L      DG V  V  L+R  V D  P   A       
Sbjct: 301 AVGKTIPAPDKPEGYSWCKAPRL------DGQVAEVGALAR-QVVDGHPLARALNAARP- 352

Query: 314 VKTFGKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDLVGEG--VGCL 371
               G   H  ++   ARL+EL      +  ++   AI   +    P   +GEG  VG +
Sbjct: 353 ----GGSVHDRVV---ARLLELARLIPAMESWIR--AIRPAEPFCAPPSPLGEGAAVGLV 403

Query: 372 EAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDI----GVQKVAEKYIKT-PEDAKP 426
           EA RGTL H     + G I    +V  T  N    D     G  ++A       P +  P
Sbjct: 404 EAARGTLGHWLGLHN-GRIAQYQIVAPTTWNFSPRDAQGNPGALEIALAGAPVLPGETTP 462

Query: 427 HVLNHMEMVIRAYDPCLSCATH 448
             + H   V+R++DPC+ C  H
Sbjct: 463 VAVQH---VVRSFDPCMVCTVH 481