Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., nickel-dependent hydrogenase large subunit from Magnetospirillum magneticum AMB-1

 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           +++I+P+TR+EGH ++ +  D  GK+ K        RG E  L GR   DA   T RICG
Sbjct: 4   RITIDPITRIEGHLRIDVEVD-GGKVTKAWSSGQMWRGVELILLGRDPRDAWAITQRICG 62

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPD 115
           +C   H + S RAV+N   +++P  A  +RN++  A  +H H +HF  L++ D
Sbjct: 63  VCTTVHAMTSVRAVENALNLEVPVNAQFIRNMIISAHAIHDHIVHFYHLSALD 115



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 359 EPTDLVGE--GVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEK 416
           +PT   GE  G G  EAPRG L H     D  I     +V +T    P  D       E 
Sbjct: 462 KPTFPKGEVMGYGFHEAPRGLLSHWTVIRDGKIANYQCVVPSTWNAGPRDDSDNIGPYEA 521

Query: 417 YIKTPEDAKPHVLNHMEMVIRAYDPCLSCATHTIDGKERMLSM 459
            +     A   +   +   + ++DPCL+CA H ++  + ++ +
Sbjct: 522 SLMDNPIADAELPLEVLRTVHSFDPCLACAVHVVEDNKEVVQV 564