Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 512 a.a., Ni,Fe-hydrogenase I large subunit from Magnetospirillum magneticum AMB-1

 Score = 77.8 bits (190), Expect = 8e-19
 Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 8   PVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGICQVS 67
           PV RVEG  ++ L   D   +D  +   +  RGFE+ L GR   D  V TPRICGIC  +
Sbjct: 10  PVNRVEGDLELRLEIADGMVVDAWSAGTM-FRGFERLLIGRGALDGLVVTPRICGICSTT 68

Query: 68  HNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDL------MFPMT 121
           H + +A+A+D V G K+P     LRNL   A +V S      ++   D         P+ 
Sbjct: 69  HLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFANPAYRAQPLY 128

Query: 122 DDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQS 173
           D+A++R     A    + V +A+   K    II  +GG+  H    V GG S
Sbjct: 129 DEAVRR----YAPLAGEAVAEAVRETKHVVEIIAIIGGQWPHSSFMVPGGLS 176



 Score = 48.1 bits (113), Expect = 7e-10
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 353 GTDIRVEPTDLV-GEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQ 411
           G DI  +P  +  G G+G ++A RG L H     D G I    ++  TV N    D G  
Sbjct: 401 GHDIYADPGPIPDGAGIGMIQAARGALGHWIAIKD-GRIERYQIITPTVWNGSPRDSGGV 459

Query: 412 KVA--EKYIKTP--EDAKPHVLNHMEMVIRAYDPCLSCATHTI 450
           +    E  I TP  +   P  + H   VIR++DPCL C+ HT+
Sbjct: 460 RGPWEEALIGTPVADADNPVEVGH---VIRSFDPCLVCSVHTV 499