Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 555 a.a., hydrogenase 4, subunit (NCBI) from Escherichia coli BW25113

 Score = 58.5 bits (140), Expect = 5e-13
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 39  RGFEKFLEGRY-IEDAPVFTPRICGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQ 97
           RG EK  E R    +    + R+CGIC  +H++A   +V+N  G+++P+ A  +R+++ +
Sbjct: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279

Query: 98  ASNVHSHALHFGM 110
              +HSH L+ G+
Sbjct: 280 VERLHSHLLNLGL 292



 Score = 28.1 bits (61), Expect = 8e-04
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 368 VGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPH 427
           +G +EAPRG  VH     D   +       AT  N P +         +Y+      + +
Sbjct: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL---------RYM-----LRGN 502

Query: 428 VLNHMEMVIRAYDPCLSCATHT--IDGKERMLSMDVYK 463
            ++   ++I + DPC SC      +D ++R      YK
Sbjct: 503 TVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540