Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 597 a.a., hydrogenase 1, large subunit from Escherichia coli BL21

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           +L ++P+TR+EGH +  ++ +D   +          RG E  L+GR   DA  F  RICG
Sbjct: 18  RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTD 122
           +C   H LAS  A+++  G+K+P  A+++RN+M      H H +HF  LA  D +  +  
Sbjct: 78  VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL-- 135

Query: 123 DALK 126
           DALK
Sbjct: 136 DALK 139



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 367 GVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQN----NPAMDIGVQKVAEKYIKTPE 422
           GVG  EAPRG L H     D G I     VV T  N    +P   IG  + A   +   +
Sbjct: 501 GVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAA---LMNTK 556

Query: 423 DAKPHVLNHMEMVIRAYDPCLSCATHTI--DGKERMLSMDV 461
            A P     +   + ++DPCL+C+TH +  DG E ++S+ V
Sbjct: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE-LISVQV 596