Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 485 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 61.2 bits (147), Expect = 6e-14
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 19/189 (10%)

Query: 7   INPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVSRFCGIC 66
           + P  R EG  ++ L V  D +      ++ T  RGFE+ L GK    A + V R CGIC
Sbjct: 6   VGPFNRVEGDLEVQLDVQGDRVASA--QVNATMYRGFEQILQGKAPHDALVYVPRICGIC 63

Query: 67  PIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEFL-IAPDFI------- 118
            ++ + +S  A+    GI  P +G     +      +  H  H +L   PDF        
Sbjct: 64  SVSQSVASARALAALGGIAMPANGQHASNVILATENLADHLTHFYLFFMPDFTRPVYAAH 123

Query: 119 ---PEADR------VEYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNITENAAS 169
               EA R       E ++     R+    ++ T+GG+  H  +I+ GG  + I      
Sbjct: 124 AWHTEAVRRFAPNHGEQVRAATAARQRWLTLLGTLGGKWPHTQSIEPGGSTRPIDAAERV 183

Query: 170 KIYYKCREY 178
           ++  + RE+
Sbjct: 184 RLLSRVREF 192



 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 27/163 (16%)

Query: 255 PRYNGRLMEVGPRARFAKFHDFKNKGAMAIHIARAYENVVHVKRAMEIIDEL----DVNG 310
           PR  G ++E G  AR         + A+A H    Y  V+   RA+E+   +    D  G
Sbjct: 326 PRLAGEVVETGAIARQLAAGHPLVRDAVARHGGNVYTRVL--ARALELARVVPLMEDWLG 383

Query: 311 KTRSNEPILGDG----EKIGLGVHEAARGHNTHQAAIDAKGRITYYNAIVATTWNI-PLI 365
             R  EP         E  G+G+ EAARG   H   +  +GRI  Y  +  T+WN  P  
Sbjct: 384 ALRPTEPFCVPSDLPDEGSGMGLSEAARGSLGHWVVV-RRGRIANYQIVAPTSWNFSPRD 442

Query: 366 GKATEGTHYKF---------------AEHVVRAYDPCVSCATH 393
              T G   +                 +H+VR++DPC+ C  H
Sbjct: 443 AAGTPGALEQALVNAPVREGEKTPVAVQHIVRSFDPCMVCTVH 485