Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 41  RGFEKFLVGKVAEFAPIAVSRFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLG 100
           RG E+ + GK          R CGIC   H  S  E IE+ C I  P+    LR +T   
Sbjct: 40  RGIERIMEGKHYLKCIHLSERVCGICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCEL 99

Query: 101 NKMHSHPLHEFLIAPDFIPEADRVEYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGML 160
            ++HSH     + A  +    +       +  +R++   +++ I G  ++     VGG+ 
Sbjct: 100 ERIHSH----LIAAAVYNLTIEHETLGIWMLNVRESIMDLLELITGNRVNMGFNVVGGVR 155

Query: 161 KNITENAASKIYYKCREYEKLAKEHVEYLIPIFESNML 198
            ++ +    KI+ K  E+E    E V+ +I +FE+  L
Sbjct: 156 LDLNKEILDKIHKKIDEFE----EDVKNIIEVFETGPL 189