Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 496 a.a., Ni/Fe hydrogenase subunit alpha from Magnetospirillum magneticum AMB-1

 Score =  112 bits (280), Expect = 2e-29
 Identities = 123/472 (26%), Positives = 192/472 (40%), Gaps = 80/472 (16%)

Query: 3   KTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVSRF 62
           K + I P +R EGH K+ + +DD+  V +   L +   RGFEKF+ G+     P+ V R 
Sbjct: 17  KRIVIEPVSRVEGHGKVTILLDDNNQVHQVR-LHIVEFRGFEKFIEGRPYWEVPVLVQRL 75

Query: 63  CGICPIAH---ATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEF-LIAPDFI 118
           CGICP++H   A+ +++ I +   +TP  +   +R L   G  + SH LH F L +PD +
Sbjct: 76  CGICPVSHHLAASKAMDMIVNGGILTPTAE--KIRRLMHYGQMLQSHALHFFHLSSPDLL 133

Query: 119 --------------PEADRVEYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNIT 164
                           A   +  K    +RK GQ ++    G+ +H      GG+ K++T
Sbjct: 134 FGFDSDVAKRNIVGVAAANPDVAKMGVLLRKFGQEVIRVTSGKRVHGTGSVPGGVNKSLT 193

Query: 165 ENAASKIYYKCREYEKLAKEHVEYLIPIFESN-MLADG--------TEIPEKLGYHDFGY 215
                 +     +    +++ V  +  +  SN  L D           + +  G  DF +
Sbjct: 194 AEERDYLLKDSDQMIAWSRDAVRIIKGLHRSNPALYDAFGAVPSTMMSLVDDKGALDFYH 253

Query: 216 IATDATYGNRENI-DQSKVVEYTPYDVYEKD-------VAVQACTTIPRYNGRLMEVGPR 267
            A  A   + E I DQ   V Y  Y+    +       +     TT+    G   +VGP 
Sbjct: 254 GALRARDKDGEVIFDQ---VSYQGYNTLLTEGVKSWSYMKFPYITTLGEEKG-WYKVGPL 309

Query: 268 ARFAKFHDFKN-------------------KGAMAIHIARAYENVVHVKRAMEIIDELDV 308
           AR                             G++  H AR  E +   +   +++ + D+
Sbjct: 310 ARIQNCDSIPTPQAEEERVEFVAHGGAKPMHGSLGFHWARMIEMLCAAETIKDLLLDPDI 369

Query: 309 NGKTRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNAIVATTWNIPLIGKA 368
            G     E   G     G+GV EA RG   H   +D    +TY N IV+TT N   +  A
Sbjct: 370 MGADLMAE---GPRRGEGIGVIEAPRGTLFHHYRVDDNDLVTYANLIVSTTNNNTAMNVA 426

Query: 369 --------------TEGTHYKFAEHVVRAYDPCVSCATHVIA-MDYDNKIVD 405
                         TEG      E  +R +DPC+SCATH +  M  +  +VD
Sbjct: 427 VRDVAKNYLQGHEITEGL-LNHIEVAIRCFDPCLSCATHALGKMPLEVTLVD 477