Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., nickel-dependent hydrogenase large subunit from Magnetospirillum magneticum AMB-1

 Score = 63.5 bits (153), Expect = 1e-14
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60
           M K + I+P TR EGH ++ ++VD   + +   + S    RG E  L+G+    A     
Sbjct: 1   MSKRITIDPITRIEGHLRIDVEVDGGKVTKA--WSSGQMWRGVELILLGRDPRDAWAITQ 58

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEF-LIAPDFI 118
           R CG+C   HA +SV A+E+A  +  P +   +R +    + +H H +H + L A D++
Sbjct: 59  RICGVCTTVHAMTSVRAVENALNLEVPVNAQFIRNMIISAHAIHDHIVHFYHLSALDWV 117



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 23/139 (16%)

Query: 285 HIARAYEN----VVHVKRAMEIIDELDVNGKTRSNEPILGDGEKIGLGVHEAARGHNTHQ 340
           H ARA  +     V V+    +ID +        N+P    GE +G G HEA RG  +H 
Sbjct: 427 HAARAVRSGVMAEVMVQNWQALIDNIGKGDTKTFNKPTFPKGEVMGYGFHEAPRGLLSHW 486

Query: 341 AAIDAKGRITYYNAIVATTWNIPLIGKATEGTHYKFAE---------------HVVRAYD 385
             I   G+I  Y  +V +TWN      +     Y+ +                  V ++D
Sbjct: 487 TVI-RDGKIANYQCVVPSTWNAGPRDDSDNIGPYEASLMDNPIADAELPLEVLRTVHSFD 545

Query: 386 PCVSCATHVIAMDYDNKIV 404
           PC++CA HV+    DNK V
Sbjct: 546 PCLACAVHVVE---DNKEV 561