Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., hydrogenase 2, large subunit (NCBI) from Escherichia coli BW25113

 Score = 64.3 bits (155), Expect = 9e-15
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60
           M + + I+P TR EGH ++  ++++ G+V K  + S T  RG E+ +  +    A + V 
Sbjct: 1   MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEFLIA 114
           R CG+C   HA SSV A E A  I  P +   +R +    +  H H +H + ++
Sbjct: 59  RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 90/390 (23%), Positives = 143/390 (36%), Gaps = 102/390 (26%)

Query: 119 PEADRVEYIKRIQ--EMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNITENAAS-----KI 171
           PE + +     +Q  E ++    +V  +GG+  H  N+ VGG+   I  +        ++
Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240

Query: 172 YYKCREYEKLAKEHVEYL-------IPIFESNMLADGTEIPEKLGYHDFGYIATDATY-- 222
            Y     +KL+ + VE +       I  F    L  G      L   +F   + + ++  
Sbjct: 241 MYIKSFIDKLS-DFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299

Query: 223 --GNRENIDQS--------------KVVEYTPYDVYEKDVAVQAC---TTIPRYNG---- 259
             G  EN D S              K ++ +    + KD A QA    TTIP Y+G    
Sbjct: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359

Query: 260 -------------RLMEVGPRARF-----AKFHDFKNK--GAMAIH-------------- 285
                        + +EVGP A       A     +NK    +AI+              
Sbjct: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419

Query: 286 --IARAYENVVHVKRAMEI--------IDELDVNGKTRSNEP-ILGDGEKIGLGVHEAAR 334
             + R     VH     +I        I  +     T   +P I   GE  G+G  EA R
Sbjct: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479

Query: 335 GHNTHQAAIDAKGRITYYNAIVATTWNI--------------PLIGKATEGTHYKF-AEH 379
           G  +H   I   G I+ Y A+V +TWN                L+G      +       
Sbjct: 480 GMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538

Query: 380 VVRAYDPCVSCATHVIAMDYDNKIVDKKII 409
            + ++DPC++CA HV+  D  N++V  K++
Sbjct: 539 TIHSFDPCMACAVHVVDAD-GNEVVSVKVL 567