Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 597 a.a., hydrogenase 1, large subunit (NCBI) from Escherichia coli BW25113

 Score = 65.5 bits (158), Expect = 4e-15
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 2   GKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSV-TPVRGFEKFLVGKVAEFAPIAVS 60
           G+ + ++P TR EGH +  + ++D  ++   N +S  T  RG E  L G+    A   V 
Sbjct: 16  GRRLVVDPITRIEGHMRCEVNINDQNVIT--NAVSCGTMFRGLEIILQGRDPRDAWAFVE 73

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEFLIA 114
           R CG+C   HA +SV AIEDA GI  P +  ++R +       H H +H + +A
Sbjct: 74  RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127



 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 59/215 (27%), Positives = 81/215 (37%), Gaps = 53/215 (24%)

Query: 236 YTPYDVYEKDVAVQACTT--------IPRYNGRLMEVGPRAR-FAKFH-------DFKNK 279
           Y P DV   D  +Q             PR+ G  MEVGP AR    +H       +  ++
Sbjct: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433

Query: 280 GAMAIHI-------------ARAYENVVHVKRAMEIIDELDVNGK--------TRSNEPI 318
              A+++              RA+E      +     D+L  N K        T   EP 
Sbjct: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493

Query: 319 LGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNAIVATTWN---------IPLIGKAT 369
               E  G+G  EA RG   H AAI   G+I  Y  +V TTWN         I     A 
Sbjct: 494 TWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552

Query: 370 EGTHYKFAEH------VVRAYDPCVSCATHVIAMD 398
             T     E        + ++DPC++C+THV+  D
Sbjct: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587