Pairwise Alignments

Query, 750 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

Subject, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 5e-13
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 20/137 (14%)

Query: 390 DSETGYIINKSGTYVLDEDITCD-MGIRINASDVIISGWRHCLIGTGFNMSAGIYTVNGT 448
           D +  + IN+SGTY L ED+  +  GI+I AS+V++ G  + LI    +   GIY +   
Sbjct: 22  DIQYNWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNN-SEGTGIY-IRSN 79

Query: 449 Y----ENIEIKHILLKNWAVGLSAPYFFTDEPSSFVSNLAVSDCTFEFNNIGVGSAVSE- 503
           Y    EN+ IK++ ++NW++G+             V N+ + +C FE N   + S  +E 
Sbjct: 80  YENYTENVTIKNLNIENWSIGIKI--------DGDVKNITIKNCEFENNEYFLKSYATEQ 131

Query: 504 ----NITIESCEFINNT 516
               N   E+ E ++N+
Sbjct: 132 YFYLNTIHENQEVMSNS 148



 Score = 48.9 bits (115), Expect = 5e-10
 Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 32/230 (13%)

Query: 175 NCTNGQIKNLTLDENAVVIYIGDSSEITVKNCTIKPNIYHDYDIYLINSENCNVTNNTFG 234
           N T  +    TL E+ +V Y G   +IT  N  +  N             N  ++NN   
Sbjct: 26  NWTINESGTYTLSEDMLVNYYG--IQITASNVVLDGN------------NNKLISNN--- 68

Query: 235 ISENTNFGVIKSY--YSNNITISENTLNGMAMGF-VFYKVTNSNIFENTFENVYGVSIGE 291
            SE T   +  +Y  Y+ N+TI    +   ++G  +   V N  I    FEN        
Sbjct: 69  -SEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENN---EYFL 124

Query: 292 QGGVSDVYVYTNNFINSTRMDVENITFNSPANVSYLYNGAVYSGIAGNYWNDYSEPEAII 351
           +   ++ Y Y N  I+  +  + N    SP  V Y Y G  Y+   GNY+  Y+  EA  
Sbjct: 125 KSYATEQYFYLNT-IHENQEVMSNSPLASPKLV-YNYGGNEYTYRLGNYYVGYTGTEA-E 181

Query: 352 NNGIWSIPYSINE---LVNDSYPLVKEKPEDGKI-HLTQSDFDSETGYII 397
           + G+++  ++  E      D YPL+K  PE+ KI  +   + DSE G ++
Sbjct: 182 DEGVYNFVHNEEESFIRAFDIYPLIK-TPENYKILKVLYPESDSENGVVV 230



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 627 NGTVTGCTFENNDYGITTSDGFIGKTIEVQENTISQNNFIENGCGLYLGGVNNWVYLNRF 686
           N T+     EN   GI   DG      +V+  TI    F  N   L       + YLN  
Sbjct: 86  NVTIKNLNIENWSIGIKI-DG------DVKNITIKNCEFENNEYFLKSYATEQYFYLNTI 138

Query: 687 ENNGQNINSISLFGNYFQSPEVTYEYGGETYKGRLGNYYGEELGT--SNAGIFDKPYGIE 744
             N + +++  L      SP++ Y YGG  Y  RLGNYY    GT   + G+++  +  E
Sbjct: 139 HENQEVMSNSPL-----ASPKLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEE 193

Query: 745 GMLLR 749
              +R
Sbjct: 194 ESFIR 198



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 141 KVVGNTINGKPIYFYKNEENIGEIPSDASQIIISNCTNGQIKNLTLDENAVVIYI-GDSS 199
           K++ N   G  IY   N EN  E              N  IKNL ++  ++ I I GD  
Sbjct: 63  KLISNNSEGTGIYIRSNYENYTE--------------NVTIKNLNIENWSIGIKIDGDVK 108

Query: 200 EITVKNCTIKPNIY 213
            IT+KNC  + N Y
Sbjct: 109 NITIKNCEFENNEY 122



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 461 NWAVGLSAPYFFTDEP--SSFVSNLAVSDCTFEFNNIGVGSAVSENITIESCEFINNTIE 518
           NW +  S  Y  +++   + +   +  S+   + NN  + S  SE   I    +I +  E
Sbjct: 26  NWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGI----YIRSNYE 81

Query: 519 GEIPFGAGILSFQNSNADITNCTFESNSVGVVSEVD-ENITIESCEFINN 567
                          N  I N   E+ S+G+  + D +NITI++CEF NN
Sbjct: 82  N-----------YTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENN 120