Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 750 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 5e-13
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 20/137 (14%)

Query: 22  DIQYNWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNN-SEGTGIY-IRSN 79
           D +  + IN+SGTY L ED+  +  GI+I AS+V++ G  + LI    +   GIY +   
Sbjct: 390 DSETGYIINKSGTYVLDEDITCD-MGIRINASDVIISGWRHCLIGTGFNMSAGIYTVNGT 448

Query: 80  YENYTENVTIKNLNIENWSIGIKI--------DGDVKNITIKNCEFENNEYFLKSYATEQ 131
           Y    EN+ IK++ ++NW++G+             V N+ + +C FE N   + S  +E 
Sbjct: 449 Y----ENIEIKHILLKNWAVGLSAPYFFTDEPSSFVSNLAVSDCTFEFNNIGVGSAVSE- 503

Query: 132 YFYLNTIHENQEVMSNS 148
               N   E+ E ++N+
Sbjct: 504 ----NITIESCEFINNT 516



 Score = 48.9 bits (115), Expect = 5e-10
 Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 32/230 (13%)

Query: 26  NWTINESGTYTLSEDMLVNYYG--IQITASNVVLDGN------------NNKLISNN--- 68
           N T  +    TL E+ +V Y G   +IT  N  +  N             N  ++NN   
Sbjct: 175 NCTNGQIKNLTLDENAVVIYIGDSSEITVKNCTIKPNIYHDYDIYLINSENCNVTNNTFG 234

Query: 69  -SEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENN---EYFL 124
            SE T   +  +Y  Y+ N+TI    +   ++G  +   V N  I    FEN        
Sbjct: 235 ISENTNFGVIKSY--YSNNITISENTLNGMAMGF-VFYKVTNSNIFENTFENVYGVSIGE 291

Query: 125 KSYATEQYFYLNT-IHENQEVMSNSPLASPKLV-YNYGGNEYTYRLGNYYVGYTGTEA-E 181
           +   ++ Y Y N  I+  +  + N    SP  V Y Y G  Y+   GNY+  Y+  EA  
Sbjct: 292 QGGVSDVYVYTNNFINSTRMDVENITFNSPANVSYLYNGAVYSGIAGNYWNDYSEPEAII 351

Query: 182 DEGVYNFVHNEEESFIRAFDIYPLIK-TPENYKILKVLYPESDSENGVVV 230
           + G+++  ++  E      D YPL+K  PE+ KI  +   + DSE G ++
Sbjct: 352 NNGIWSIPYSINE---LVNDSYPLVKEKPEDGKI-HLTQSDFDSETGYII 397



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 86  NVTIKNLNIENWSIGIKI-DG------DVKNITIKNCEFENNEYFLKSYATEQYFYLNTI 138
           N T+     EN   GI   DG      +V+  TI    F  N   L       + YLN  
Sbjct: 627 NGTVTGCTFENNDYGITTSDGFIGKTIEVQENTISQNNFIENGCGLYLGGVNNWVYLNRF 686

Query: 139 HENQEVMSNSPL-----ASPKLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEE 193
             N + +++  L      SP++ Y YGG  Y  RLGNYY    GT   + G+++  +  E
Sbjct: 687 ENNGQNINSISLFGNYFQSPEVTYEYGGETYKGRLGNYYGEELGT--SNAGIFDKPYGIE 744

Query: 194 ESFIR 198
              +R
Sbjct: 745 GMLLR 749



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 63  KLISNNSEGTGIYIRSNYENYTE--------------NVTIKNLNIENWSIGIKIDGDVK 108
           K++ N   G  IY   N EN  E              N  IKNL ++  ++ I I GD  
Sbjct: 141 KVVGNTINGKPIYFYKNEENIGEIPSDASQIIISNCTNGQIKNLTLDENAVVIYI-GDSS 199

Query: 109 NITIKNCEFENNEY 122
            IT+KNC  + N Y
Sbjct: 200 EITVKNCTIKPNIY 213



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 26  NWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGI----YIRSNYE 81
           NW +  S  Y  +++   + +   +  S+   + NN  + S  SE   I    +I +  E
Sbjct: 461 NWAVGLSAPYFFTDEP--SSFVSNLAVSDCTFEFNNIGVGSAVSENITIESCEFINNTIE 518

Query: 82  N-----------YTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENN 120
                          N  I N   E+ S+G+  + D +NITI++CEF NN
Sbjct: 519 GEIPFGAGILSFQNSNADITNCTFESNSVGVVSEVD-ENITIESCEFINN 567



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 76/335 (22%), Positives = 122/335 (36%), Gaps = 49/335 (14%)

Query: 29  INESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVT 88
           I   G Y L+E+ + N  GI I++ NV+LDG    L  N +   G+    N  N+  N+T
Sbjct: 22  ITSPGMYYLTEN-ISNTNGIIISSDNVMLDGQGYFL--NITGNCGV----NSTNH-NNIT 73

Query: 89  IKNLNIENWSIGIKIDGDVKNITIKNCEFENNEYFLKSYATEQYFYLNTIHENQEVMSNS 148
           +KN+ I   S       +V   T++N     N  +L S     Y        N  V++NS
Sbjct: 74  VKNVKITTTSYSGIYFKNVNFPTVENNTI--NTTYLCSLWGSGY--------NFTVVNNS 123

Query: 149 PLASPKLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEEESFIRAFDIYPLIKT 208
                 +   +GGN    +L  Y V   G     + +Y + + E    I +     +I  
Sbjct: 124 ------MSSGFGGNYGLEQLTTYKV--VGNTINGKPIYFYKNEENIGEIPSDASQIIISN 175

Query: 209 PENYKILKVLYPESDSENGVVVADIFALANYPENYVIKETPVTTPSPSHSSSGGRSYDSD 268
             N +I  +       EN VV+            Y+   + +T  + +   +    YD  
Sbjct: 176 CTNGQIKNLTL----DENAVVI------------YIGDSSEITVKNCTIKPNIYHDYDIY 219

Query: 269 ISNDIESKVIKNFVSSAAVIYGNEIDQQYAEELRERIQNAEGFKISGNSVIVGGPNANGF 328
           + N     V  N    +       I   Y+  +        G  +    V     N+N F
Sbjct: 220 LINSENCNVTNNTFGISENTNFGVIKSYYSNNITISENTLNGMAM--GFVFYKVTNSNIF 277

Query: 329 AKEYNNQFEMPISNDYPGENKGVIQVLKVHGSSIN 363
              + N + + I     GE  GV  V     + IN
Sbjct: 278 ENTFENVYGVSI-----GEQGGVSDVYVYTNNFIN 307