Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 892 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 42/288 (14%)

Query: 29  INESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVT 88
           + E+G   ++ D+ V+  GI++  SN+++D   NKL S N EG GI I  N      NV+
Sbjct: 54  VPENGVVEVTTDLKVSN-GIEVNKSNIIIDLKGNKL-SGNYEGRGISISGN------NVS 105

Query: 89  IKNLNIENWSIGIKIDGDVKNITIKNCEFENNEYFLKSY-------ATEQYFYLNTIHEN 141
           +KN  + N+  GI ++        +NC+  NNE F  +Y       +       N ++EN
Sbjct: 106 LKNGVVSNFDYGIVLE------NAENCKISNNEVFGNTYDGIYILNSKNNDISENLVYEN 159

Query: 142 QEV-MSNSPLASPKLVYN-----------YGGNEYTYRLGNYYVGYTGTEAEDEGVYNFV 189
             + +  S +      +N           Y G E      N   G    E ED GV  FV
Sbjct: 160 GVIGIVTSGIFLDGSEFNNITKNTVNNNIYNGIELLNSKNNLISGNNVFENEDNGV--FV 217

Query: 190 HNEEESFIRAFDIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYPENYVIKETP 249
            N + + I   ++Y   +   N  + +     +   N +   D   + ++       E  
Sbjct: 218 WNSKNNSIIFNELY---QNENNGILTRESKFNTIESNNIFENDDSGIYSWKS----FENT 270

Query: 250 VTTPSPSHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIYGNEIDQQY 297
           ++    S +S G   ++SD++   ++K++ N  S  ++ +G + +  Y
Sbjct: 271 ISKNKISKNSEGIILWNSDLNVLFKNKLLNNVKSGISIEFGTKYNTIY 318



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 65  ISNNSEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENN 120
           IS NSEG  ++      N   NV  KN  + N   GI I+   K  TI +  F N+
Sbjct: 276 ISKNSEGIILW------NSDLNVLFKNKLLNNVKSGISIEFGTKYNTIYDNLFNNS 325