Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 351 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 53/285 (18%), Positives = 123/285 (43%), Gaps = 12/285 (4%)

Query: 15  YFTVQFNQIAIYWVFGIVFGSIISVF-GKNKIHKLFASIQNRRLGVFGMIPAGLLGIASP 73
           Y  V F  I    V  ++ GS++ V   ++ + +LF      R G+   +  GL  +   
Sbjct: 70  YAQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFG-----RAGLGSTLRGGLFALPGM 124

Query: 74  ICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNPQLIIYSA-ALGETALAVRIISALAC 132
           +C     P+AA   +  +      AF +++ +LNP  +++    LG    A+R+++ +  
Sbjct: 125 MCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVL 184

Query: 133 GVIAGLLVKFLFNDRKFFN--FSGFSEPTSRDNDPNVLLRLLKNIWRNIKATGHYFLIGI 190
            V   L+ + +    +         +E +  ++ P  L R L+ +W+   +T   +++ +
Sbjct: 185 VVGVSLVAQRISRPDQVPEPALEAMAEVSVVESQP-FLSRWLRTLWQLFWSTIPVYILAV 243

Query: 191 LLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGA 250
           L+    + ++ P     +  S     ++  A +G    +     +P++   +  GM  G 
Sbjct: 244 LILGAARVWLFPHVDGAMTNSL--VWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTGP 301

Query: 251 AAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVV 295
           A A ++T P+  + +L  ++    A+        T++  ++ G++
Sbjct: 302 AVALLMTLPSVSLPSLLMLRKDFDARVLATVAGLTMLVGVVCGLI 346