Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  143 bits (361), Expect = 2e-38
 Identities = 131/552 (23%), Positives = 247/552 (44%), Gaps = 37/552 (6%)

Query: 189 DILNNNNEIVDQVKADTGDEATFSLGKQ----RISTSLI-ENGKRPVGTSISDEVWTYV- 242
           ++LNNN E VD+ K  +G  AT  +       RISTSL  ++G R +GT +  +   Y  
Sbjct: 107 EVLNNNFEDVDEFKQMSGGVATVFVRSGEDFIRISTSLTKQDGNRAIGTVLDRQGPAYQR 166

Query: 243 MSQNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAKNDARNKIIM-- 300
           +     Y G A +     +T Y+P+ D++  VI ++F+G   TDA  A+ +   +  +  
Sbjct: 167 VLSGQTYIGRAVLFDRSYMTQYSPVRDSSGQVIAVLFIGFDYTDAQNAQFENLKRFRIGQ 226

Query: 301 ---LALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDS 357
              LAL      +L+     + + + +  +    +  G G +         +E   +S  
Sbjct: 227 TGSLALLDEQKRWLVPPAGVQALDQAVPVMLDLAKTPGKGRF----WADKNEEFYSVSVP 282

Query: 358 FNK-----MAENVKNLMKTMDMD---KLELANLLNNVSDVMNRV--------AKGDFTAR 401
           F+      +A   K  ++++  D   +L + ++L  +  V   V          GD   +
Sbjct: 283 FDGGPWAVVASMPKAEIRSVTWDVGIRLVIGSVLAMLLAVGATVWLLRSKLAPLGDLVRQ 342

Query: 402 ADESRENN---KLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVA 458
           A+     +   +L  + +  +  +A    ++ E L  +   I+K  +E+    +  + ++
Sbjct: 343 AEALGAGDLSVRLNVSSHDEIGQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLS 402

Query: 459 EAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVE 518
             A +  E  S +   +  + EE  +T  N  +   + E   + ++E  + + IG   ++
Sbjct: 403 GGAYEGMEQQSGEITSMAGAVEEFSATSLNIADNMGSTE---RLAQENAQQTRIGRNSMQ 459

Query: 519 NAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGD 578
            A S ++ I   ++     I  LG+  ++I  + G+I  IAEQT LLALNA+IEAARAG+
Sbjct: 460 EASSSLEHIAAALNSTATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAAIEAARAGE 519

Query: 579 AGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDE 638
            G+GFAVVA E++ LA   +++ ++I+  I  +     + +    +G   + +G+    +
Sbjct: 520 QGRGFAVVADEVRNLASRTREATDEISGMIQSIQQETGNAISTMERGNVLMQEGLSRNAD 579

Query: 639 VNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTAS 698
           V  AL +I E    +  +   I    Q  S        N Q IA  + E       +  +
Sbjct: 580 VASALARIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSIALANSEQREVVSNLAIT 639

Query: 699 TEELNSIIEEIR 710
            +EL ++   +R
Sbjct: 640 AKELETLAAGLR 651