Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 768 a.a., twitching motility protein PilJ from Variovorax sp. SCN45

 Score =  147 bits (371), Expect = 2e-39
 Identities = 96/321 (29%), Positives = 159/321 (49%), Gaps = 13/321 (4%)

Query: 390 MNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKG 449
           +  VA+GD T  A  + +              +AD +    EEL LL   +  V++    
Sbjct: 452 LQTVAEGDLTQEATVTED----------ITGAIADSVNYTVEELRLL---VGNVQNTATR 498

Query: 450 AEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKEN 509
             +T +QV   +T++  A+++Q  +++E+ + + +  E    V S A+E+   + +  + 
Sbjct: 499 VAQTTSQVESTSTELLAASTEQLREIRETGQSVLTMAERINGVSSQAQESATVARQSLQA 558

Query: 510 SEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNA 569
           +  G++ V+NAI  M SI + I E  K IK LGE  ++I E+T LI DI EQT +LALNA
Sbjct: 559 ASSGLQAVQNAIGGMNSIRDQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNA 618

Query: 570 SIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEV 629
           +I+AA AG+AG+GF+VVA E++ LAE    +   I+  +  + +  +D V    +    V
Sbjct: 619 AIQAASAGEAGRGFSVVAEEVQRLAERSADATRQISALVKAIQTDTQDAVGAMERSTQGV 678

Query: 630 DKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFT 689
            +G    D    AL +I       A  I  I   A   +++      N Q I A++E+  
Sbjct: 679 VEGAKLSDNAGTALSEIDRVSRRLADLIEQISQSASREADSANVVAANIQHIFAVTEQTG 738

Query: 690 ATAEEVTASTEELNSIIEEIR 710
                      EL+ + EE+R
Sbjct: 739 EGTRTTAQQVRELSQMAEELR 759



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 55/303 (18%), Positives = 113/303 (37%), Gaps = 23/303 (7%)

Query: 441 QKVEDELKGAEETATQVAEAA--TQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEE 498
           Q++E  LK  E+  TQ +      Q   AA +  A +   SE L  +  + ++  SA   
Sbjct: 323 QQLEAILKTYEQMRTQASAILGNLQGLVAAREAQASILTDSEPLRKSLGDLQDKLSARTG 382

Query: 499 T---------VKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKIN 549
                     V S   +     IG  +V     R      V +    + +   E+  ++N
Sbjct: 383 LGAGTIVLLFVLSLAALALAGAIGFVQVREGRERAA----VAERERLAAEQASEEAGRVN 438

Query: 550 EVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTID 609
                    A Q  +L L   ++    GD  +   V      A+A+ +  +VE++   + 
Sbjct: 439 N--------ANQAAILRLMNELQTVAEGDLTQEATVTEDITGAIADSVNYTVEELRLLVG 490

Query: 610 GVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASE 669
            V +          + +    + + A  E    + +  +SV   A +ING+   AQ ++ 
Sbjct: 491 NVQNTATRVAQTTSQVESTSTELLAASTEQLREIRETGQSVLTMAERINGVSSQAQESAT 550

Query: 670 NTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSERVSEKSNQ 729
               +L+ A       +        +    +E +  I+ +   ++E+  ++E +S+ + Q
Sbjct: 551 VARQSLQAASSGLQAVQNAIGGMNSIRDQIQETSKRIKRLGESSQEIGEITELISDITEQ 610

Query: 730 FEI 732
             +
Sbjct: 611 TNV 613