Pairwise Alignments
Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 686 a.a., Protein PilJ from Pseudomonas putida KT2440
Score = 125 bits (314), Expect = 7e-33
Identities = 104/383 (27%), Positives = 179/383 (46%), Gaps = 25/383 (6%)
Query: 352 QELSDSFNKMAENVKNLM--KTMD------MDKLELANLLNNVSDVMNRVAKGDFTARAD 403
Q L D + +A +NL +T+D + L LA+++ + VM R A+
Sbjct: 290 QTLLDEASHLANGFENLAGGRTLDTVGGYVLGLLALASIIL-IGLVMVRTTNRQLRETAE 348
Query: 404 ESRENNKLEKAINTAVSNVAD----LIKELREEL-----DLLNIQIQKVEDELKGAEETA 454
++ N + + + +AD + + E+ D +N + ++ D + +A
Sbjct: 349 KNERNQQAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSA 408
Query: 455 TQVAEA-------ATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIK 507
QVA A A Q+A+A+ Q+A++ E+SE + E+ V + A E+ K +E
Sbjct: 409 VQVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSV 468
Query: 508 ENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLAL 567
+ G E V N I+ M +I I + K IK LGE ++I ++ LI DIA+QT +LAL
Sbjct: 469 AIANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILAL 528
Query: 568 NASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKD 627
NA+I+A+ AG+AG+GFAVVA E++ LAE + I + + + + V +
Sbjct: 529 NAAIQASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTA 588
Query: 628 EVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEE 687
EV +G + AL +I+ A I+ I AQ + + I ++ +
Sbjct: 589 EVVRGARLAQDAGVALAEIEGVSQNLADLIHSISDAAQLQTSSAGQISHTMAVIQQITAQ 648
Query: 688 FTATAEEVTASTEELNSIIEEIR 710
+A + S L + E+R
Sbjct: 649 TSAGSGATADSIRHLARMASEMR 671
Score = 40.0 bits (92), Expect = 4e-07
Identities = 72/358 (20%), Positives = 141/358 (39%), Gaps = 46/358 (12%)
Query: 406 RENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVA 465
R+N + A V ++ + L E + L ++ +KV + L + A QVA A Q+
Sbjct: 131 RKNTDIILASEQTVLSLHQVAATLAETVPQLQVEYEKVVEILLQSGAPANQVAVAQRQLL 190
Query: 466 EAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKE-----NSEIGVEKVENA 520
A ++ S + + ++A + A ++ E N+ I V +VE+A
Sbjct: 191 LA-----ERILGSVNTVLAGDDSAAQAADAFGRDAGRFGQVLEGMINGNATIQVTRVEDA 245
Query: 521 ISR---------MQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALN-AS 570
+R Q + +DE+ ++ L + + L + + ++ LA +
Sbjct: 246 DARARLAEIAELFQFVAGSVDEILETSPELFRVREAAGNIFSLSQTLLDEASHLANGFEN 305
Query: 571 IEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVD 630
+ R D G+ + + ALA I + + T N ++ +T + + + +
Sbjct: 306 LAGGRTLDTVGGYVL---GLLALASIILIGLVMVRTT----NRQLRETAEKNERNQQAIM 358
Query: 631 KGVIAIDEVNDALLKIKESVNES-----AIKIN-----------GIKHGAQNASENTEGA 674
+ + I+E+ D L + SV E A IN I H A + +
Sbjct: 359 RLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAVQVAAAVQDT 418
Query: 675 LKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSER---VSEKSNQ 729
A+ +A SE A E + + ++ I+ + A E V+ER ++ K N+
Sbjct: 419 QNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSVAIANKGNE 476
Score = 40.0 bits (92), Expect = 4e-07
Identities = 67/338 (19%), Positives = 132/338 (39%), Gaps = 52/338 (15%)
Query: 438 IQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAE 497
IQ+ +VED A ++AE VA + + + E+S EL E A ++S ++
Sbjct: 237 IQVTRVEDA--DARARLAEIAELFQFVAGSVDE----ILETSPELFRVREAAGNIFSLSQ 290
Query: 498 ETVKSSEEIKENSE--IGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 555
+ + + E G ++ + + + + + M+ +++ E
Sbjct: 291 TLLDEASHLANGFENLAGGRTLDTVGGYVLGLLALASIILIGLVMVRTTNRQLRETAE-- 348
Query: 556 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVED-------INHTI 608
K+ Q ++ L IE GD +V A+A+ I SV+ INH+
Sbjct: 349 KNERNQQAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSA 408
Query: 609 DGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNES--------------- 653
V + ++DT + + + I E ++A+ + ES++
Sbjct: 409 VQVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSV 468
Query: 654 --AIKINGIKHGAQNASENTEGALKN-AQDIAALSE------EFTATAEEVTASTE--EL 702
A K N + H N +N +++ A+ I L E + + +++ T L
Sbjct: 469 AIANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILAL 528
Query: 703 NSIIEE---------IRVIAEELTHVSERVSEKSNQFE 731
N+ I+ V+A+E+ ++ER S + Q E
Sbjct: 529 NAAIQASLAGEAGRGFAVVADEVQRLAERSSSATRQIE 566