Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 986 a.a., PAS domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  124 bits (311), Expect = 2e-32
 Identities = 101/314 (32%), Positives = 161/314 (51%), Gaps = 20/314 (6%)

Query: 393 VAKGDFT--ARADESRENNKLEKAINTAVSNVADLIKE----LREELDLLNIQIQKVEDE 446
           +A+GDFT   +A+E RE  +    +    + +A  ++E     R+  + L  ++  + + 
Sbjct: 388 IARGDFTHEIQAEEVREFQRSSALLRAMEAKLAYAVQERAENARKAQEKLRSEMLNLTEL 447

Query: 447 LKGAEETATQVAEAATQVAEAASDQSAKLQESSEELES---TYENAKEVYSAAEETVK-S 502
           L+G  E    VAE +TQ AE   + +A L  ++EEL     T   A E+ S   +TV  +
Sbjct: 448 LEG--EVDNTVAEISTQ-AERLKEGAAHLLATAEELRDKSETVARAIEITSGNVQTVAGA 504

Query: 503 SEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQT 562
           +EE++ +S     +++++    ++  + +DE   S+  L E   +I +V  LI+ IA QT
Sbjct: 505 TEELEASSREITARIQSSSEHSEAARHRVDEASSSVGTLTEATARIGDVVSLIQAIAGQT 564

Query: 563 GLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLG 622
            +LALNA+IEAARAGDAGKGFAVVASE+K LAE+     ED    I  VN++  D     
Sbjct: 565 RMLALNATIEAARAGDAGKGFAVVASEVKGLAEQ----TED---AIGRVNAQARDIESTT 617

Query: 623 LKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIA 682
            K    V+     I ++     +I  S +E       I   A  A+++T      A D+ 
Sbjct: 618 QKAVATVEAVADTIRDMEQIAGQIAASADEQRAATGEIMSSAVQAADHTRDVADAAADVL 677

Query: 683 ALSEEFTATAEEVT 696
             SE+   TA +V+
Sbjct: 678 KASEQTGVTARKVS 691



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 571 IEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVD 630
           I+A    +  +  A++ +    LA  +++  E+     + + S + +  +L L+G  EVD
Sbjct: 397 IQAEEVREFQRSSALLRAMEAKLAYAVQERAENARKAQEKLRSEMLNLTEL-LEG--EVD 453

Query: 631 KGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTA 690
             V    E++    ++KE           ++  ++  +   E    N Q +A  +EE  A
Sbjct: 454 NTVA---EISTQAERLKEGAAHLLATAEELRDKSETVARAIEITSGNVQTVAGATEELEA 510

Query: 691 TAEEVTASTEELNSIIEEIRVIAEE-------LTHVSERVSE 725
           ++ E+TA  +  +   E  R   +E       LT  + R+ +
Sbjct: 511 SSREITARIQSSSEHSEAARHRVDEASSSVGTLTEATARIGD 552