Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 639 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  144 bits (362), Expect = 2e-38
 Identities = 127/541 (23%), Positives = 246/541 (45%), Gaps = 36/541 (6%)

Query: 193 NNNEIVDQVKADTGDEATF--SLGKQ--RISTSLIENGKRPVGTSIS-DEVWTYVMSQNA 247
           N  ++VD + +  G  AT     G    R+ST++I+NG+R +GT ++ D      ++Q  
Sbjct: 106 NTFDLVDNLTSVMGGTATLFSKTGDDYIRVSTNVIKNGERAIGTKLAPDGKAIKKINQQE 165

Query: 248 VYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQT-----DAIAAKNDARNKIIMLA 302
            Y G  ++LG+  +T Y P+ +++ DV+G+ +VG          AI   +  +   + L 
Sbjct: 166 AYYGAVDILGSPYLTGYEPMFNSSGDVVGIWYVGYSADLNVLEQAIKQSHVLKEGFVALR 225

Query: 303 LFGILIAFLITSYSNRKITKPIEELKKGTEE---FGNGNYDYKTTVKTGDELQELSDS-- 357
                I       ++R++   ++       E   F    YD      T ++   +  S  
Sbjct: 226 DAKGNIRMHSAHVNDRQVANALQPNDDWVVEVVPFSPWGYDIILVASTSEKSAMVRSSVL 285

Query: 358 ---FNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGD----FTARADESRENNK 410
                 +  +V  L+    + K  +   L     V+N ++ G+    F  +A  S E   
Sbjct: 286 VVVLKIVLASVGILITIWLLVKYIVGKPLEEFIGVVNNLSSGEGDLTFRFQASRSDEFGT 345

Query: 411 LEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASD 470
           + +A N  +S + D ++ + E  D +  + +++      +++T +Q++     +  A S 
Sbjct: 346 MARAFNGLLSQLQDTLQSVDEATDHMLAKSERLNATALQSKDTVSQLSRETESINNAIS- 404

Query: 471 QSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNV 530
               +Q++++ + ST  ++ E   AA++  ++S          V  +   I  +QS  + 
Sbjct: 405 ---LMQQNAQTVSSTIRSSSEAAHAADQDTRNS----------VSVLAQTIKDIQSQASD 451

Query: 531 IDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEI 590
           +D   + I  L +  ++I+ V  +I++IAEQT LLALNA+IEAARAG+ G+GFAVVA E+
Sbjct: 452 VDASVQVITELAQASEEISGVMEVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 511

Query: 591 KALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESV 650
           ++LA   + S E+I + I+ +        +   + K+   K V       D+L +  ++V
Sbjct: 512 RSLASRTQSSTEEIRNMIERLQQGSRVASEKMQQNKETAYKTVDTTKHAGDSLKQALDAV 571

Query: 651 NESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIR 710
                        A+  +E      K    I  +    T  A+EV  + E L   +++++
Sbjct: 572 ARITTLNRDAATMAEGQTEVANDVNKGVSSIQQVGNANTTYAKEVVDNCEALVQQVKQMQ 631

Query: 711 V 711
           +
Sbjct: 632 M 632



 Score = 43.9 bits (102), Expect = 3e-08
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 43/219 (19%)

Query: 515 EKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAA 574
           E  ++ +++ + +     +   ++  L  + + IN    L++  A QT    + +S EAA
Sbjct: 366 EATDHMLAKSERLNATALQSKDTVSQLSRETESINNAISLMQQNA-QTVSSTIRSSSEAA 424

Query: 575 RAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVI 634
            A D                ++ + SV  +  TI  + S+  D                 
Sbjct: 425 HAAD----------------QDTRNSVSVLAQTIKDIQSQASDV---------------- 452

Query: 635 AIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEE----FTA 690
                 DA +++   + +++ +I+G+    +N +E T     NA   AA + E    F  
Sbjct: 453 ------DASVQVITELAQASEEISGVMEVIRNIAEQTNLLALNAAIEAARAGEQGRGFAV 506

Query: 691 TAEEVTASTEELNSIIEEIRVIAEELTHVSERVSEKSNQ 729
            A+EV +      S  EEIR + E L   S   SEK  Q
Sbjct: 507 VADEVRSLASRTQSSTEEIRNMIERLQQGSRVASEKMQQ 545