Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 155 LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRD 214
           LRD  ++ +++ +G R SE ++++  D     G  R+   K  +ER V    E    +  
Sbjct: 139 LRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLG-KGSKERLVPFGGEARRWIER 197

Query: 215 YIKEN----IKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVI 270
           Y++E+    +       +F         RV   WI  V K A        + P       
Sbjct: 198 YLEESRPAILDGQQTPDLFVTARGAGMTRVMF-WII-VKKHATAAGIHVPLSP------- 248

Query: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-SKER 312
           H+LRH  AT LL+ GV +  V+ +LGH  + TT  Y+H ++ER
Sbjct: 249 HTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARER 291