Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 380 a.a., Phage (Mu-like) virion morphogenesis protein from Sphingobium sp. HT1-2

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 16/159 (10%)

Query: 167 TGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKR--DS 224
           T  R SE LSI+    DF+K R  I + K  +       +     + D++K +++   D 
Sbjct: 229 TSMRMSEVLSIQPAHLDFDKRRIFIPNAKAGQRE-----QPMTGALADFLKAHLEALPDD 283

Query: 225 NDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDK 284
            +++F N   ++G+      +T + K   R +K  G+ P+   ++ H+ RH   T L+  
Sbjct: 284 AEWLFPNAASKSGR------VTTIRKAHRRVVKAAGLNPD--EVLRHTFRHTAITHLVQA 335

Query: 285 GVPIDVVKEILGHRSLETTLYYSHSK-ERKNGMLDNIQK 322
           GV +  V+++ GH++L     Y+H+  E  N  +D++++
Sbjct: 336 GVDLPTVQKVSGHKTLAMVARYAHANGEHINAAMDDLER 374