Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 309 a.a., Site-specific tyrosine recombinase XerD from Sphingobium sp. HT1-2

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 155 LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRD 214
           LR + ++ +L+ +G R +E +S+  K    ++    IR  K   ER V I++     V  
Sbjct: 133 LRLSALIELLYGSGLRATELVSLPRKALAVDRPFLIIRG-KGARERLVPISDRARAAVAT 191

Query: 215 YIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLR 274
           ++  ++  DS  ++F +    +  R++L  +      A       G+ PE  R+  H LR
Sbjct: 192 WLA-HVPADSL-WLFPSGK-SHVSRIRLYQLVKQLAAAA------GIAPE--RVSPHVLR 240

Query: 275 HGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313
           H  AT LL+ G  +  ++ +LGH  + TT  Y+H   R+
Sbjct: 241 HAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR 279