Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 25/156 (16%)

Query: 155 LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIR--DTKTYEERTVVIAEETVEIV 212
           L D +IV V  +TG RR+E L +   D  F++G   +    TK  + R +        I+
Sbjct: 188 LHDFIIVAV--DTGFRRAELLGLSAPD--FQEGMIHLYAGQTKNGDARAIPATSRVARIL 243

Query: 213 RDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHS 272
                   +R  N   F+   + +   ++  W T         L+    + E  + ++H 
Sbjct: 244 H-------RRRMNLTTFEGLTVSS---LRHQWAT---------LRAYMGMEEDPQFIVHM 284

Query: 273 LRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
           LRH  A+ L+ +GVP+  V+  +GH+++ TTL Y+H
Sbjct: 285 LRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAH 320