Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 30/296 (10%)

Query: 25  IYIKKFQE----EREFDNIKPSTIKNDVTSLKVFL-AFCEEIGKEPYS-LTTHDFVIFFN 78
           I IK+F+E    E+          + DV  L  F+ A   ++  E        DF+ + N
Sbjct: 5   ICIKQFEEYLKLEKSLSRHSVEAYERDVRKLVDFMDAKGLQVAPEDMKPAILRDFLEWIN 64

Query: 79  MLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFE-RESIERKRFSKFEKKHYDTINFD 137
            L      T  +Q R  + ++ FY+ L   +  + +  ++IE     K ++K  DT+ F 
Sbjct: 65  ELG----MTPHSQARTLSGIRAFYKFLIMEDMMQTDPTDTIEAP---KLDRKLPDTLAFH 117

Query: 138 TYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTY 197
              +++  I LS      R+  ++  L+ +G R SE L +R  +   + G  +I   K  
Sbjct: 118 EIEQLLSAIDLSTPEGT-RNRAMLETLYSSGLRVSELLDLRISNLYADAGFLKISG-KGE 175

Query: 198 EERTVVIAEET---VEIVRDYIK--ENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKA 252
           +ER V I  +    +++ RD I+   NIK+ + D +F N   + G ++    +  + K  
Sbjct: 176 KERLVPIGRDALKHIQLYRDGIRCHLNIKKGNEDILFLN---RRGAKMSRVMVFTIIKDL 232

Query: 253 VRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
             K   +      K +  H+ RH  AT L++ G  +  V+E+LGH S+ TT  Y+H
Sbjct: 233 TAKAGIQ------KTVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282