Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 285 a.a., integrase from Magnetospirillum magneticum AMB-1

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 28/280 (10%)

Query: 28  KKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRNCT 87
           ++  E+    N+ P+T ++ + ++  F  F     + P  L  HD V  + +    +  +
Sbjct: 9   RRMIEDMTVRNLSPATQRSYLHAVSKFSRF---FNRSPDRLD-HDDVRTWQVHLVSQGIS 64

Query: 88  VRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKEII 147
             + N++   L+ FY +           E  ER  +++  ++    ++ D   R ++ + 
Sbjct: 65  WASLNQFVAALRFFYGVTLRCP------EIPERIVYARQPRRLPIVLSADEVVRFLEAVP 118

Query: 148 LSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEE 207
              +RT L  A      + TG R SE ++++  D D  +   R+   K  ++R V+++ +
Sbjct: 119 SLKNRTALTTA------YATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQ 172

Query: 208 TVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKR 267
            + I+R Y    + R  + ++F     +  K ++      V   A R       I   KR
Sbjct: 173 LLGILRTYWP--LARPEH-WLFPG---REDKPIE----PTVLNSACRSACVAAGID--KR 220

Query: 268 IVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYS 307
           + +H+LRH  AT LL+ G  I +++ +LGH +L TT  Y+
Sbjct: 221 VTVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYT 260