Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 369 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 93.2 bits (230), Expect = 9e-24
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 37/288 (12%)

Query: 27  IKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCE-----EIGKEPYSLTTHDFVIFFNMLN 81
           I+ FQ+  +      ST+     SL++F  F E     EI  E     T DF+I      
Sbjct: 97  IEAFQDWMKNKRYSESTVMTYRGSLEIFFRFLENKPLSEIKNEDLEKFTKDFII------ 150

Query: 82  NRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNR 141
             R  +V  Q++  N +K+F+ + +    ++ + E + R R      K  + ++ +   R
Sbjct: 151 -DRQYSVSYQSQVINAIKLFFNIKQN---RKLDPEVVSRPRKPS---KLPNVLSKEEVKR 203

Query: 142 IIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERT 201
           I++      +   ++   ++ +++  G RRSE L ++  D D ++G   +R +K  ++R 
Sbjct: 204 ILE------AHKNIKHRTMLSIIYACGLRRSEVLHLKISDVDSKRGLLIVRQSKGKKDRV 257

Query: 202 VVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRK-LKEEG 260
           V ++++T+ ++R+Y K         Y      +  GK++   + +   +K ++  L + G
Sbjct: 258 VPLSDKTIALLREYYK---------YERPQYFLFXGKKLNSKYSSGSLQKILKSALGKSG 308

Query: 261 VIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
           +    K + +H LRH  AT LL+ G  +  ++EILGH S  TT  Y+H
Sbjct: 309 I---KKPVTLHWLRHSFATHLLENGTDLRYIQEILGHNSSRTTEIYTH 353